RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SOX1O00570 391 aaPredicted RBP17.35■□□□□ 0.37
LIMS3-201ENST00000437679 CDKL5O76039 1030 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 DEXIO95424 95 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 CYP2C9P11712 490 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 CSF2RAP15509 400 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 ZNF76P36508 570 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 SREBF1P36956 1147 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 SP4Q02446 784 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 PTGISQ16647 500 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 GPR20Q99678 358 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 MXRA8Q9BRK3 442 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 SH3GLB2Q9NR46 395 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 VPS54Q9P1Q0 977 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 TPCN1Q9ULQ1 816 aa17.35■□□□□ 0.37
LIMS3-201ENST00000437679 HAS3O00219 553 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 ATP9AO75110 1047 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 LGALS2P05162 132 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 KCNA2P16389 499 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 EPHB4P54760 987 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 AK2P54819 239 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 CCL23P55773 120 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 CEP55Q53EZ4 464 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 GDF6Q6KF10 455 aaPredicted RBP17.34■□□□□ 0.37
LIMS3-201ENST00000437679 LRCH3Q96II8 777 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 RNPC3Q96LT9 517 aaKnown RBP17.34■□□□□ 0.37
LIMS3-201ENST00000437679 C16orf70Q9BSU1 422 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 PKD2L1Q9P0L9 805 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 HDAC6Q9UBN7 1215 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 GTF2IRD1Q9UHL9 959 aa17.34■□□□□ 0.37
LIMS3-201ENST00000437679 UMODL1Q5DID0 1318 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 H3BRB1 525 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 PFKFB2O60825 505 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 NEK4P51957 841 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 NLRP5P59047 1200 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 ARHGAP4P98171 946 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 SCRN1Q12765 414 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 BFSP2Q13515 415 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 CCDC155Q8N6L0 562 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 RETREG2Q8NC44 543 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 TUT1Q9H6E5 874 aaKnown RBP17.33■□□□□ 0.36
LIMS3-201ENST00000437679 IL23AQ9NPF7 189 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 KCNH7Q9NS40 1196 aa17.33■□□□□ 0.36
LIMS3-201ENST00000437679 C8orf34Q49A92 452 aa17.32■□□□□ 0.36
LIMS3-201ENST00000437679 UTP14CQ5TAP6 766 aaKnown RBP17.32■□□□□ 0.36
LIMS3-201ENST00000437679 PSRC1Q6PGN9 363 aaPredicted RBP17.32■□□□□ 0.36
LIMS3-201ENST00000437679 RPUSD2Q8IZ73 545 aaKnown RBP17.32■□□□□ 0.36
LIMS3-201ENST00000437679 CYP2W1Q8TAV3 490 aa17.32■□□□□ 0.36
LIMS3-201ENST00000437679 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.32■□□□□ 0.36
LIMS3-201ENST00000437679 SDF4Q9BRK5 362 aa17.32■□□□□ 0.36
LIMS3-201ENST00000437679 WNT8AQ9H1J5 351 aa17.32■□□□□ 0.36
LIMS3-201ENST00000437679 ZNF215Q9UL58 517 aaPredicted RBP17.32■□□□□ 0.36
LIMS3-201ENST00000437679 MEIS1O00470 390 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 PITPNM1O00562 1244 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 CYP3A4P08684 503 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 ACRP10323 421 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 TMEM240Q5SV17 173 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 GPR153Q6NV75 609 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 NIPA1Q7RTP0 329 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 FAM177A1Q8N128 213 aaPredicted RBP17.31■□□□□ 0.36
LIMS3-201ENST00000437679 CAGE1Q8TC20 777 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 RASGRP4Q8TDF6 673 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 SEPT1Q8WYJ6 367 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 SCLYQ96I15 445 aa17.31■□□□□ 0.36
LIMS3-201ENST00000437679 JPH1Q9HDC5 661 aaPredicted RBP17.31■□□□□ 0.36
LIMS3-201ENST00000437679 TRIP12Q14669 1992 aaPredicted RBP17.31■□□□□ 0.36
LIMS3-201ENST00000437679 NFASCO94856 1347 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 STK36Q9NRP7 1315 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 ADAMTS3O15072 1205 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 ARP10275 920 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 TCF7P36402 384 aaPredicted RBP17.3■□□□□ 0.36
LIMS3-201ENST00000437679 GALNT17Q6IS24 598 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 ZNF365Q70YC5 407 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 C16orf59Q7L2K0 433 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 PLA2G4DQ86XP0 818 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 AGO4Q9HCK5 861 aaKnown RBP17.3■□□□□ 0.36
LIMS3-201ENST00000437679 SLC9A2Q9UBY0 812 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 PCDHA4Q9UN74 947 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 TELO2Q9Y4R8 837 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 KAT6AQ92794 2004 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 SZT2Q5T011 3432 aa17.3■□□□□ 0.36
LIMS3-201ENST00000437679 C17orf102A2RUQ5 167 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 FAM86B1E9PN63 330 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 FGBP02675 491 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 PFKMP08237 780 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 FAM86B2P0C5J1 330 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 SMIM10L2AP0DMW4 78 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 SMIM10L2BP0DMW5 78 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 XBP1P17861 261 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 RFC2P35250 354 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 PTK7Q13308 1070 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 TRIM50Q86XT4 487 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 AFAP1L1Q8TED9 768 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 CRYGNQ8WXF5 182 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 C22orf23Q9BZE7 217 aa17.29■□□□□ 0.36
LIMS3-201ENST00000437679 MTIF3Q9H2K0 278 aaKnown RBP17.29■□□□□ 0.36
LIMS3-201ENST00000437679 GSTTP1A0A1W2PQM5 241 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 IQCF3P0C7M6 154 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 GNAT1P11488 350 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 SETQ01105 290 aaPredicted RBP17.28■□□□□ 0.36
LIMS3-201ENST00000437679 ME3Q16798 604 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms