RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 RAVER2Q9HCJ3 691 aaKnown RBP10.54□□□□□ -0.72
HMGB4-201ENST00000425537 TBC1D22BQ9NU19 505 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 FBXO40Q9UH90 709 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 LIMA1Q9UHB6 759 aaKnown RBP10.54□□□□□ -0.72
HMGB4-201ENST00000425537 KIAA1024Q9UPX6 916 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 AFG3L2Q9Y4W6 797 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 RPTORQ8N122 1335 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 LOXHD1Q8IVV2 1947 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 A0A1B0GTH6 734 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 UNCXA6NJT0 531 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 B4DLN1 442 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 CXCL11O14625 94 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 MAFGO15525 162 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 STAM2O75886 525 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 SSBP05455 408 aaKnown RBP eCLIP10.53□□□□□ -0.72
HMGB4-201ENST00000425537 ATP1A3P13637 1013 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 IDEP14735 1019 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 CD44P16070 742 aaKnown RBP10.53□□□□□ -0.72
HMGB4-201ENST00000425537 COPB2P35606 906 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 KCNJ6P48051 423 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 STX17P56962 302 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 LRRC63Q05C16 580 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 PPATQ06203 517 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 SPIRE1Q08AE8 756 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 PABPC4Q13310 644 aaKnown RBP eCLIP10.53□□□□□ -0.72
HMGB4-201ENST00000425537 EPHA7Q15375 998 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 CATSPERGQ6ZRH7 1159 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 ARMC9Q7Z3E5 817 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 PPFIBP1Q86W92 1011 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 GPBP1Q86WP2 473 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 ERO1BQ86YB8 467 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 C2orf69Q8N8R5 385 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 PROCA1Q8NCQ7 364 aaPredicted RBP10.53□□□□□ -0.72
HMGB4-201ENST00000425537 CLEC4DQ8WXI8 215 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 TEX13BQ9BXU2 312 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 HSD3B7Q9H2F3 369 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 RNF146Q9NTX7 359 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 PANK4Q9NVE7 773 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.53□□□□□ -0.72
HMGB4-201ENST00000425537 KCND2Q9NZV8 630 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 ADAMTS5Q9UNA0 930 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 GDAQ9Y2T3 454 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.53□□□□□ -0.72
HMGB4-201ENST00000425537 FRMPD4Q14CM0 1322 aa10.53□□□□□ -0.72
HMGB4-201ENST00000425537 PARP14Q460N5 1801 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 MYMKA6NI61 221 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 KCNJ18B7U540 433 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 IPO5O00410 1097 aaKnown RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 AOC2O75106 756 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 PSMD10O75832 226 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 EYA4O95677 639 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 PRKCSHP14314 528 aaPredicted RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 GAP43P17677 238 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 CCND2P30279 289 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 KCNJ12Q14500 433 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 NOLC1Q14978 699 aaKnown RBP eCLIP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 ARHGEF16Q5VV41 709 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 SNRNP48Q6IEG0 339 aaKnown RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 STXBP4Q6ZWJ1 553 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 NLRX1Q86UT6 975 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 SMYD4Q8IYR2 804 aaPredicted RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 CSGALNACT2Q8N6G5 542 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 SYT2Q8N9I0 419 aaPredicted RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 CHST13Q8NET6 341 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 KIAA1524Q8TCG1 905 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 SYTL5Q8TDW5 730 aaPredicted RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 ATG4CQ96DT6 458 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 IQCDQ96DY2 449 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 CDHR1Q96JP9 859 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 NACC1Q96RE7 527 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 ZIC5Q96T25 663 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 MPHOSPH6Q99547 160 aaKnown RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 P2RX7Q99572 595 aaKnown RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 EIF2AK1Q9BQI3 630 aaKnown RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 ACAD9Q9H845 621 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 ELP3Q9H9T3 547 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 CREBZFQ9NS37 354 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 SAMSN1Q9NSI8 373 aaKnown RBP10.52□□□□□ -0.73
HMGB4-201ENST00000425537 NRBP1Q9UHY1 535 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 VAV3Q9UKW4 847 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 UBIAD1Q9Y5Z9 338 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 TLL2Q9Y6L7 1015 aa10.52□□□□□ -0.73
HMGB4-201ENST00000425537 POTEB3A0JP26 581 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 LRRC10BA6NIK2 292 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 NFIBO00712 420 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 N4BP3O15049 544 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 DKC1O60832 514 aaKnown RBP eCLIP10.51□□□□□ -0.73
HMGB4-201ENST00000425537 TBCAO75347 108 aaKnown RBP10.51□□□□□ -0.73
HMGB4-201ENST00000425537 TUBB4AP04350 444 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 SKILP12757 684 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 SFNP31947 248 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 JAK3P52333 1124 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 VGLL4Q14135 290 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 NR1I3Q14994 352 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 TCP11X2Q5H9J9 407 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 DNTTIP2Q5QJE6 756 aaKnown RBP10.51□□□□□ -0.73
HMGB4-201ENST00000425537 FAM26FQ5R3K3 315 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 POTEBQ6S5H4 581 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 NSMFQ6X4W1 530 aa10.51□□□□□ -0.73
HMGB4-201ENST00000425537 OTOP1Q7RTM1 612 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms