RNA–Protein interactions for RNA: ENST00000425443.6

COL12A1-205, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5

Gene COL12A1, Length 3,135 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-205ENST00000425443 MTMR9Q96QG7 549 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 NUDT12Q9BQG2 462 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 RIC8AQ9NPQ8 531 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 BMP2KQ9NSY1 1161 aaPredicted RBP14.35□□□□□ -0.11
COL12A1-205ENST00000425443 PCDHA12Q9UN75 941 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 MYH10P35580 1976 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 EIF3CLB5ME19 914 aaKnown RBP14.35□□□□□ -0.11
COL12A1-205ENST00000425443 ZBTB5O15062 677 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 CRKP46108 304 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 AARSP49588 968 aaKnown RBP eCLIP14.35□□□□□ -0.11
COL12A1-205ENST00000425443 MSL1Q68DK7 614 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 EIF3CQ99613 913 aaKnown RBP14.35□□□□□ -0.11
COL12A1-205ENST00000425443 LRRC27Q9C0I9 530 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 CDK5RAP2Q96SN8 1893 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 KRT86O43790 486 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 FGFR1OPO95684 399 aaKnown RBP14.35□□□□□ -0.11
COL12A1-205ENST00000425443 MMP10P09238 476 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 FXR2P51116 673 aaKnown RBP eCLIP14.35□□□□□ -0.11
COL12A1-205ENST00000425443 KRT83P78385 493 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 ZBED6P86452 979 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 KCTD19Q17RG1 926 aaPredicted RBP14.35□□□□□ -0.11
COL12A1-205ENST00000425443 UNC13DQ70J99 1090 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 CREG2Q8IUH2 290 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 CRACR2AQ9BSW2 395 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 SELENOOQ9BVL4 669 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 GBP3Q9H0R5 595 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 NLRC4Q9NPP4 1024 aa14.35□□□□□ -0.11
COL12A1-205ENST00000425443 MOCS3O95396 460 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 SPA17Q15506 151 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 TSG101Q99816 390 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 DMGDHQ9UI17 866 aaKnown RBP14.34□□□□□ -0.11
COL12A1-205ENST00000425443 KLRG2A4D1S0 409 aaPredicted RBP14.34□□□□□ -0.11
COL12A1-205ENST00000425443 NCK2O43639 380 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 EDIL3O43854 480 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 NOVP48745 357 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 TUBB4BP68371 445 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 SLC7A5Q01650 507 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 KIF5AQ12840 1032 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 PDIA5Q14554 519 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 CERKLQ49MI3 558 aaPredicted RBP14.34□□□□□ -0.11
COL12A1-205ENST00000425443 TTC19Q6DKK2 380 aaPredicted RBP14.34□□□□□ -0.11
COL12A1-205ENST00000425443 CCNI2Q6ZMN8 369 aaPredicted RBP14.34□□□□□ -0.11
COL12A1-205ENST00000425443 LEKR1Q6ZMV7 388 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 RRAGAQ7L523 313 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 NELFCDQ8IXH7 590 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 DDX12PQ92771 950 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 CCDC17Q96LX7 622 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 EHD4Q9H223 541 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 POLD4Q9HCU8 107 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 BLOC1S4Q9NUP1 217 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 PCDHA1Q9Y5I3 950 aa14.34□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L15C9J2P7 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L13C9JLJ4 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L11C9JVI0 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L18D6R9N7 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L22D6RA61 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L17D6RBQ6 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L19D6RCP7 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L20D6RJB6 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 AKR1B10O60218 316 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 KRT18P05783 430 aaKnown RBP14.33□□□□□ -0.11
COL12A1-205ENST00000425443 SNHG28P0DPA3 235 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 APBA1Q02410 837 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L24Q0WX57 530 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 TDRD12Q587J7 1177 aaKnown RBP14.33□□□□□ -0.11
COL12A1-205ENST00000425443 PPP1R18Q6NYC8 613 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 USP17L6PQ6QN14 398 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 HHIPL2Q6UWX4 724 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 ZFPM1Q8IX07 1006 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 RAD54LQ92698 747 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 PNMA5Q96PV4 448 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 LRRC1Q9BTT6 524 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 KCNQ5Q9NR82 932 aa14.33□□□□□ -0.11
COL12A1-205ENST00000425443 PLIN4Q96Q06 1357 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 UBR3Q6ZT12 1888 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 PVALEFA0A1B0GWK0 134 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 HMGB2P26583 209 aaKnown RBP14.33□□□□□ -0.12
COL12A1-205ENST00000425443 APOBEC3HQ6NTF7 200 aaKnown RBP14.33□□□□□ -0.12
COL12A1-205ENST00000425443 NFRKBQ6P4R8 1299 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 ZNF662Q6ZS27 426 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 KCNK18Q7Z418 384 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 RETREG2Q8NC44 543 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 MASTLQ96GX5 879 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 SIK3Q9Y2K2 1263 aa14.33□□□□□ -0.12
COL12A1-205ENST00000425443 IGKV6D-41A0A0C4DH26 115 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 BUB1O43683 1085 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 PPP1R11O60927 126 aaPredicted RBP14.32□□□□□ -0.12
COL12A1-205ENST00000425443 POLD1P28340 1107 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 PTPROQ16827 1216 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 SLFN13Q68D06 897 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 COL23A1Q86Y22 540 aaPredicted RBP14.32□□□□□ -0.12
COL12A1-205ENST00000425443 IFIH1Q9BYX4 1025 aaKnown RBP14.32□□□□□ -0.12
COL12A1-205ENST00000425443 MED4Q9NPJ6 270 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 RPS6KA5O75582 802 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 EEF2P13639 858 aaKnown RBP14.32□□□□□ -0.12
COL12A1-205ENST00000425443 VAV2P52735 878 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 RNASE9P60153 205 aaKnown RBP14.32□□□□□ -0.12
COL12A1-205ENST00000425443 PPARDQ03181 441 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 VIPAS39Q9H9C1 493 aa14.32□□□□□ -0.12
COL12A1-205ENST00000425443 PPP4R3AQ6IN85 833 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms