RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 TXLNAP40222 546 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 RPS6P62753 249 aaKnown RBP12.72□□□□□ -0.37
LINC00539-201ENST00000411525 GRB14Q14449 540 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 Q4G0T1 1027 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 AK8Q96MA6 479 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 KCNMB3Q9NPA1 279 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 SLC5A4Q9NY91 659 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 FBXO40Q9UH90 709 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 DDX20Q9UHI6 824 aaKnown RBP12.72□□□□□ -0.37
LINC00539-201ENST00000411525 KCNH3Q9ULD8 1083 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 ZNF236Q9UL36 1845 aa12.72□□□□□ -0.37
LINC00539-201ENST00000411525 FAM86B1E9PN63 330 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 FAM86B2P0C5J1 330 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 CNGA1P29973 690 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 ZNF76P36508 570 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 FXR2P51116 673 aaKnown RBP eCLIP12.71□□□□□ -0.37
LINC00539-201ENST00000411525 BAATQ14032 418 aaPredicted RBP12.71□□□□□ -0.37
LINC00539-201ENST00000411525 CAMK4Q16566 473 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 TMEM266Q2M3C6 531 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 PRR16Q569H4 304 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 RBM43Q6ZSC3 357 aaKnown RBP12.71□□□□□ -0.37
LINC00539-201ENST00000411525 USP49Q70CQ1 688 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 DPP9Q86TI2 863 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 LENG9Q96B70 501 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 EPSTI1Q96J88 318 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 TIGD1Q96MW7 591 aa12.71□□□□□ -0.37
LINC00539-201ENST00000411525 A1CFQ9NQ94 594 aaKnown RBP12.71□□□□□ -0.37
LINC00539-201ENST00000411525 CUL9Q8IWT3 2517 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 IGLV3-22A0A075B6J6 115 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 TBX3O15119 743 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 MARCH6O60337 910 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 SLC25A27O95847 323 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 TXKP42681 527 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 SETQ01105 290 aaPredicted RBP12.7□□□□□ -0.38
LINC00539-201ENST00000411525 GSE1Q14687 1217 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 LRRC26Q2I0M4 334 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 OLFML2BQ68BL8 750 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.7□□□□□ -0.38
LINC00539-201ENST00000411525 SLFN12Q8IYM2 578 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 DEFB123Q8N688 67 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 IGSF22Q8N9C0 903 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 ARRDC4Q8NCT1 418 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 SHCBP1Q8NEM2 672 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 ETNPPLQ8TBG4 499 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 HAS1Q92839 578 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 TAAR1Q96RJ0 339 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 LBHD1Q9BQE6 289 aaPredicted RBP12.7□□□□□ -0.38
LINC00539-201ENST00000411525 PYM1Q9BRP8 204 aaKnown RBP12.7□□□□□ -0.38
LINC00539-201ENST00000411525 MOV10L1Q9BXT6 1211 aaKnown RBP12.7□□□□□ -0.38
LINC00539-201ENST00000411525 RAB34Q9BZG1 259 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 SENP6Q9GZR1 1112 aaPredicted RBP12.7□□□□□ -0.38
LINC00539-201ENST00000411525 PXMP2Q9NR77 195 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 CYP39A1Q9NYL5 469 aa12.7□□□□□ -0.38
LINC00539-201ENST00000411525 LRRC37A2A6NM11 1700 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 DNM1LO00429 736 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 POLR2DO15514 142 aaKnown RBP12.69□□□□□ -0.38
LINC00539-201ENST00000411525 EIF2AK2P19525 551 aaKnown RBP12.69□□□□□ -0.38
LINC00539-201ENST00000411525 TECP42680 631 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 CEP55Q53EZ4 464 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 ARHGEF16Q5VV41 709 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 PCNX4Q63HM2 1172 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 LRSAM1Q6UWE0 723 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 KRBA2Q6ZNG9 492 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 NCAPG2Q86XI2 1143 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 IL31RAQ8NI17 732 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 RMDN3Q96TC7 470 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 SDF4Q9BRK5 362 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 CCSER1Q9C0I3 900 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 MROH8Q9H579 483 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 TTC12Q9H892 705 aaPredicted RBP12.69□□□□□ -0.38
LINC00539-201ENST00000411525 FLRT1Q9NZU1 646 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 PRKAG2Q9UGJ0 569 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 USP25Q9UHP3 1055 aa12.69□□□□□ -0.38
LINC00539-201ENST00000411525 A0A087X0B3 334 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 PP2D1A8MPX8 630 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 DLL1O00548 723 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 ACTN4O43707 911 aaKnown RBP12.68□□□□□ -0.38
LINC00539-201ENST00000411525 ERCC3P19447 782 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 ADORA2AP29274 412 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 UBA7P41226 1012 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 PGM5Q15124 567 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 XRRA1Q6P2D8 792 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 NIPA1Q7RTP0 329 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 CABP7Q86V35 215 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 PLA2G4DQ86XP0 818 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 CKAP2LQ8IYA6 745 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 ABRAQ8N0Z2 381 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 ANKRD35Q8N283 1001 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 PDILTQ8N807 584 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 CNNM3Q8NE01 707 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 NPLOC4Q8TAT6 608 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 DHX58Q96C10 678 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 FAM20AQ96MK3 541 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 MXRA8Q9BRK3 442 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 PDCD2LQ9BRP1 358 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 DISC1Q9NRI5 854 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 CCDC39Q9UFE4 941 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 PCDHA12Q9UN75 941 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 STXBP5LQ9Y2K9 1186 aa12.68□□□□□ -0.38
LINC00539-201ENST00000411525 PLXNA1Q9UIW2 1896 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms