RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 PRKAG3Q9UGI9 489 aa13.93□□□□□ -0.18
SPTLC1P3-201ENST00000403408 CTNNA3Q9UI47 895 aa13.93□□□□□ -0.18
SPTLC1P3-201ENST00000403408 SUPT16HQ9Y5B9 1047 aaKnown RBP13.93□□□□□ -0.18
SPTLC1P3-201ENST00000403408 MRVI1Q9Y6F6 885 aa13.93□□□□□ -0.18
SPTLC1P3-201ENST00000403408 GVINP1Q7Z2Y8 2422 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 TTC3P53804 2025 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 B4DLN1 442 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 CTSHP09668 335 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 MX1P20591 662 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 MRPL12P52815 198 aaKnown RBP13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 SLC35G1Q2M3R5 365 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 CELF3Q5SZQ8 465 aaKnown RBP13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 ARHGEF16Q5VV41 709 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 RNF135Q8IUD6 432 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 DHX37Q8IY37 1157 aaKnown RBP13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 TTC14Q96N46 770 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 SAMD11Q96NU1 681 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 YME1L1Q96TA2 773 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 KATNAL1Q9BW62 490 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 CHMP4BQ9H444 224 aaKnown RBP13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 JMJD4Q9H9V9 463 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 RCAN3Q9UKA8 241 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 PNMA2Q9UL42 364 aa13.92□□□□□ -0.18
SPTLC1P3-201ENST00000403408 EMSYQ7Z589 1322 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 PPFIA4O75335 1185 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 GGPS1O95749 300 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 UBA1P22314 1058 aaKnown RBP13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 HSD17B4P51659 736 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 GHRHRQ02643 423 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 TCF15Q12870 199 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 GPATCH4Q5T3I0 446 aaKnown RBP13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 ATP6V0A1Q93050 837 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 PDCD2LQ9BRP1 358 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 RNPEPQ9H4A4 650 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 HELLSQ9NRZ9 838 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 KMT2EQ8IZD2 1858 aa13.91□□□□□ -0.18
SPTLC1P3-201ENST00000403408 CACNA1AO00555 2505 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 C5orf67F2Z3F1 127 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 CSPG5O95196 566 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 SMIM10L2AP0DMW4 78 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 SMIM10L2BP0DMW5 78 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 DNAJB1P25685 340 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 VSIG10LQ86VR7 867 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 PNMA1Q8ND90 353 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 SPATA33Q96N06 139 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 IFIH1Q9BYX4 1025 aaKnown RBP13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 VAT1LQ9HCJ6 419 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 ZNF292O60281 2723 aa13.9□□□□□ -0.18
SPTLC1P3-201ENST00000403408 ZMYM6O95789 1325 aa13.9□□□□□ -0.19
SPTLC1P3-201ENST00000403408 C17orf102A2RUQ5 167 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CFBP00751 764 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 LGALS2P05162 132 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MYCLP12524 364 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CTNNB1P35222 781 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 BMPR1AP36894 532 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ADAM17P78536 824 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 SEMA3FQ13275 785 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 NMIQ13287 307 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MCMDC2Q4G0Z9 681 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 STOX1Q6ZVD7 989 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 STAG2Q8N3U4 1231 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 SEPT8Q92599 483 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 EDAQ92838 391 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MSLNLQ96KJ4 702 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MAF1Q9H063 256 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 SETD4Q9NVD3 440 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CLEC1BQ9P126 229 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 KIAA1671Q9BY89 1806 aa13.89□□□□□ -0.19
SPTLC1P3-201ENST00000403408 DNAH14Q0VDD8 3507 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CHRNA1P02708 482 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 HOXA13P31271 388 aaPredicted RBP13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ADAM15Q13444 863 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 FAM26DQ5JW98 314 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MFSD6Q6ZSS7 791 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ADGRD2Q7Z7M1 963 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 DGKHQ86XP1 1220 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 TRIM50Q86XT4 487 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MCF2L2Q86YR7 1114 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 LINC01599Q8WXQ3 324 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 CLP1Q92989 425 aaKnown RBP13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 EVI5LQ96CN4 794 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MTMR8Q96EF0 704 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 IL17RAQ96F46 866 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MFSD14AQ96MC6 490 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 IGFLR1Q9H665 355 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 MRPL11Q9Y3B7 192 aaKnown RBP13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 DMXL1Q9Y485 3027 aa13.88□□□□□ -0.19
SPTLC1P3-201ENST00000403408 KAT6AQ92794 2004 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 TMEM221A6NGB7 291 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 H3BRB1 525 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 M0R296 226 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 SMAD4Q13485 552 aaKnown RBP13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 PGM5Q15124 567 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 RUFY4Q6ZNE9 571 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 BMP8AQ7Z5Y6 402 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 FIBCD1Q8N539 461 aa13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ENAHQ8N8S7 591 aaPredicted RBP13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 ZNF689Q96CS4 500 aaPredicted RBP13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 TUT1Q9H6E5 874 aaKnown RBP13.87□□□□□ -0.19
SPTLC1P3-201ENST00000403408 FAM86C1Q9NVL1 165 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms