RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 DUSP11O75319 330 aaKnown RBP11.5□□□□□ -0.57
VPS53-202ENST00000389040 CCL5P13501 91 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 EIF2AK2P19525 551 aaKnown RBP11.5□□□□□ -0.57
VPS53-202ENST00000389040 ICAM3P32942 547 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 CIITAP33076 1130 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 TOB1P50616 345 aaPredicted RBP11.5□□□□□ -0.57
VPS53-202ENST00000389040 NKX3-2P78367 333 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 TTLL4Q14679 1199 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 MOXD1Q6UVY6 613 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 NLRX1Q86UT6 975 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 GIMAP8Q8ND71 665 aaPredicted RBP11.5□□□□□ -0.57
VPS53-202ENST00000389040 CRYGNQ8WXF5 182 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 GPRASP2Q96D09 838 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 PURBQ96QR8 312 aaKnown RBP11.5□□□□□ -0.57
VPS53-202ENST00000389040 RNF208Q9H0X6 261 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 DDX20Q9UHI6 824 aaKnown RBP11.5□□□□□ -0.57
VPS53-202ENST00000389040 PLXNB2O15031 1838 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.5□□□□□ -0.57
VPS53-202ENST00000389040 FAM237AA0A1B0GTK4 181 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 CCDC194A0A1B0GVG4 234 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 RARBP10826 455 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 ARHGAP4P98171 946 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 NR5A1Q13285 461 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 IQCB1Q15051 598 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 NONOQ15233 471 aaKnown RBP eCLIP11.5□□□□□ -0.57
VPS53-202ENST00000389040 UBE2SQ16763 222 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 CEP55Q53EZ4 464 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 RESP18Q5W5W9 173 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 TAPT1Q6NXT6 567 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 SHC4Q6S5L8 630 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 SHISA4Q96DD7 197 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 ABHD8Q96I13 439 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 TIGD1Q96MW7 591 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 SENP7Q9BQF6 1050 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 NAT10Q9H0A0 1025 aaKnown RBP11.5□□□□□ -0.57
VPS53-202ENST00000389040 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.5□□□□□ -0.57
VPS53-202ENST00000389040 KIAA1468Q9P260 1216 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 HPSEQ9Y251 543 aa11.5□□□□□ -0.57
VPS53-202ENST00000389040 HTTP42858 3142 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 BAZ2BQ9UIF8 2168 aaKnown RBP11.49□□□□□ -0.57
VPS53-202ENST00000389040 CYP3A7-CYP3A51PA0A087WV96 503 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 GOLGA6L19H0YKK7 550 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 CYP3A7P24462 503 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 SYKP43405 635 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 GJA8P48165 433 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 CCDC144BQ3MJ40 725 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 DUSP28Q4G0W2 176 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 JAKMIP3Q5VZ66 844 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 CEP57L1Q8IYX8 460 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 KRI1Q8N9T8 703 aaKnown RBP11.49□□□□□ -0.57
VPS53-202ENST00000389040 ANKLE1Q8NAG6 615 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 ARRDC4Q8NCT1 418 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 OXER1Q8TDS5 423 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 ERCC4Q92889 916 aaPredicted RBP11.49□□□□□ -0.57
VPS53-202ENST00000389040 SPC25Q9HBM1 224 aa11.49□□□□□ -0.57
VPS53-202ENST00000389040 ZHX1Q9UKY1 873 aaPredicted RBP11.49□□□□□ -0.57
VPS53-202ENST00000389040 SPATA31C2B4DYI2 1134 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 SGPL1O95470 568 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 MYCLP12524 364 aaPredicted RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 GCFC2P16383 781 aaKnown RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 TRAPPC10P48553 1259 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 MRPS9P82933 396 aaKnown RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 SETQ01105 290 aaPredicted RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 TNFAIP2Q03169 654 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 ORC2Q13416 577 aaPredicted RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 ZRSR1Q15695 479 aaKnown RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 PLA2G4DQ86XP0 818 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 TRPV1Q8NER1 839 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 EMID1Q96A84 441 aaPredicted RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 CLIC6Q96NY7 704 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 WDR11Q9BZH6 1224 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 CRISPLD2Q9H0B8 497 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 UNC93B1Q9H1C4 597 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 JADE2Q9NQC1 790 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 OGDHLQ9ULD0 1010 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 UBIAD1Q9Y5Z9 338 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 A0A087WWV3 80 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 GOLGA6L6A8MZA4 724 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 MEIS1O00470 390 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 TPM3P06753 285 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 CNGA1P29973 690 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 ZNF75DP51815 510 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 TRIM32Q13049 653 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 NEDD9Q14511 834 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 BRDTQ58F21 947 aaPredicted RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 LHX8Q68G74 356 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 PPP4R3AQ6IN85 833 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 CCDC62Q6P9F0 684 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 DHX40Q8IX18 779 aaKnown RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 TBCKQ8TEA7 893 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 TNFRSF25Q93038 417 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 MXRA8Q9BRK3 442 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 CEP131Q9UPN4 1083 aa11.48□□□□□ -0.57
VPS53-202ENST00000389040 GNEQ9Y223 722 aaKnown RBP11.48□□□□□ -0.57
VPS53-202ENST00000389040 DOCK3Q8IZD9 2030 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 BECN2A8MW95 431 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 KPNA6O60684 536 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 TXNP10599 105 aaKnown RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 CCND3P30281 292 aaPredicted RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 ZNF76P36508 570 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms