RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 TACO1Q9BSH4 297 aaKnown RBP19.54■□□□□ 0.72
COL18A1-202ENST00000355480 COA1Q9GZY4 146 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 ZSWIM5Q9P217 1185 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 PPME1Q9Y570 386 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 GFPT2O94808 682 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 SRGAP2CP0DJJ0 459 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 ZNF341Q9BYN7 854 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 EMILIN3Q9NT22 766 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 ERBB3P21860 1342 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 CDK8P49336 464 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 SNAP25P60880 206 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 RBL2Q08999 1139 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 ZNF449Q6P9G9 518 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 PRPF3O43395 683 aaKnown RBP19.54■□□□□ 0.72
COL18A1-202ENST00000355480 CPP00450 1065 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 MMP10P09238 476 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 SGO2Q562F6 1265 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 HVCN1Q96D96 273 aa19.54■□□□□ 0.72
COL18A1-202ENST00000355480 ANXA13P27216 316 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 SUSD4Q5VX71 490 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 FAM133AQ8N9E0 248 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 UBN1Q9NPG3 1134 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 SPDYE2BA6NHP3 402 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 HEXIM1O94992 359 aaKnown RBP19.53■□□□□ 0.72
COL18A1-202ENST00000355480 SLFN14P0C7P3 912 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 PLA2G4BP0C869 781 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 SPDYE6P0CI01 402 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 MUM1Q2TAK8 710 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 PPP1R2P3Q6NXS1 205 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 FNDC3AQ9Y2H6 1198 aaKnown RBP19.53■□□□□ 0.72
COL18A1-202ENST00000355480 ZNF853P0CG23 659 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 CASP2P42575 452 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 FOXP4Q8IVH2 680 aaPredicted RBP19.53■□□□□ 0.72
COL18A1-202ENST00000355480 CHAMP1Q96JM3 812 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 CAPS2Q9BXY5 557 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 BSDC1Q9NW68 430 aaPredicted RBP19.53■□□□□ 0.72
COL18A1-202ENST00000355480 USH1CQ9Y6N9 552 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 PNMA6FA0A0J9YX94 578 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 ATXN8OSP0DMR3 200 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 RASGRF1Q13972 1273 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 IQCB1Q15051 598 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 MASTLQ96GX5 879 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 CALN1Q9BXU9 219 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 MRPL47Q9HD33 250 aaKnown RBP19.53■□□□□ 0.72
COL18A1-202ENST00000355480 MXI1P50539 228 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 CFAP61Q8NHU2 1237 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 BCL2L12Q9HB09 334 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 SAMD9Q5K651 1589 aa19.53■□□□□ 0.72
COL18A1-202ENST00000355480 PTPN12Q05209 780 aaKnown RBP19.52■□□□□ 0.72
COL18A1-202ENST00000355480 ARHGEF18Q6ZSZ5 1173 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 SLC35F6Q8N357 371 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 NLRP4Q96MN2 994 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 PALLDQ8WX93 1383 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 KRT10P13645 584 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 GOLGA8FQ08AF8 430 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 GOLGA8DPQ0D2H9 430 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 DPCR1Q3MIW9 517 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 SCARA5Q6ZMJ2 495 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 OSBPL3Q9H4L5 887 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 RPF1Q9H9Y2 349 aaKnown RBP19.52■□□□□ 0.72
COL18A1-202ENST00000355480 PIH1D3Q9NQM4 214 aaKnown RBP19.52■□□□□ 0.72
COL18A1-202ENST00000355480 KCTD6Q8NC69 237 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 HEXIM2Q96MH2 286 aaKnown RBP19.52■□□□□ 0.72
COL18A1-202ENST00000355480 HAUS8Q9BT25 410 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 MAN1B1Q9UKM7 699 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 C21orf2O43822 256 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 MYL1P05976 194 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 IFNAR1P17181 557 aa19.52■□□□□ 0.72
COL18A1-202ENST00000355480 CTTNQ14247 550 aaKnown RBP19.52■□□□□ 0.71
COL18A1-202ENST00000355480 LLGL1Q15334 1064 aa19.52■□□□□ 0.71
COL18A1-202ENST00000355480 DARS2Q6PI48 645 aaKnown RBP19.52■□□□□ 0.71
COL18A1-202ENST00000355480 SDCCAG3Q96C92 435 aa19.52■□□□□ 0.71
COL18A1-202ENST00000355480 PNMA3Q9UL41 463 aa19.52■□□□□ 0.71
COL18A1-202ENST00000355480 CEP170Q5SW79 1584 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 RNF139Q8WU17 664 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 DAAM1Q9Y4D1 1078 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 PLCG1P19174 1290 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 SMAP1Q8IYB5 467 aaPredicted RBP19.51■□□□□ 0.71
COL18A1-202ENST00000355480 TTC1Q99614 292 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 FAM49AQ9H0Q0 323 aaPredicted RBP19.51■□□□□ 0.71
COL18A1-202ENST00000355480 USP6P35125 1406 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 SART1O43290 800 aaKnown RBP19.51■□□□□ 0.71
COL18A1-202ENST00000355480 ELF1P32519 619 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 ARMCX2Q7L311 632 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 ABCA5Q8WWZ7 1642 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 RNF207Q6ZRF8 634 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 ANKARQ7Z5J8 1434 aa19.51■□□□□ 0.71
COL18A1-202ENST00000355480 THOC5Q13769 683 aaKnown RBP19.5■□□□□ 0.71
COL18A1-202ENST00000355480 PTPN21Q16825 1174 aa19.5■□□□□ 0.71
COL18A1-202ENST00000355480 DSTYKQ6XUX3 929 aa19.5■□□□□ 0.71
COL18A1-202ENST00000355480 MSTO1Q9BUK6 570 aa19.5■□□□□ 0.71
COL18A1-202ENST00000355480 PRPSAP2O60256 369 aa19.5■□□□□ 0.71
COL18A1-202ENST00000355480 ECEL1O95672 775 aa19.5■□□□□ 0.71
COL18A1-202ENST00000355480 BASP1P80723 227 aaKnown RBP19.5■□□□□ 0.71
COL18A1-202ENST00000355480 SURF1Q15526 300 aa19.5■□□□□ 0.71
COL18A1-202ENST00000355480 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.5■□□□□ 0.717e-7■■■■□ 26.3
COL18A1-202ENST00000355480 LRGUKQ96M69 825 aa19.5■□□□□ 0.71
COL18A1-202ENST00000355480 FTOQ9C0B1 505 aaKnown RBP eCLIP19.5■□□□□ 0.715e-9■■■■■ 33.5
COL18A1-202ENST00000355480 LMCD1Q9NZU5 365 aa19.5■□□□□ 0.71
COL18A1-202ENST00000355480 IL9RQ01113 521 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms