RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SENP7Q9BQF6 1050 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 LARP6Q9BRS8 491 aaKnown RBP21.07■□□□□ 0.96
CLN3-202ENST00000355477 TM6SF1Q9BZW5 370 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 TMEM260Q9NX78 707 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 CXXC1Q9P0U4 656 aaPredicted RBP21.07■□□□□ 0.96
CLN3-202ENST00000355477 CYP46A1Q9Y6A2 500 aa21.07■□□□□ 0.96
CLN3-202ENST00000355477 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 GRXCR1A8MXD5 290 aa21.06■□□□□ 0.96
CLN3-202ENST00000355477 PRPF3O43395 683 aaKnown RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 PPFIA3O75145 1194 aa21.06■□□□□ 0.96
CLN3-202ENST00000355477 LGALS2P05162 132 aa21.06■□□□□ 0.96
CLN3-202ENST00000355477 SCG2P13521 617 aa21.06■□□□□ 0.96
CLN3-202ENST00000355477 KCNA2P16389 499 aa21.06■□□□□ 0.96
CLN3-202ENST00000355477 CCT2P78371 535 aaKnown RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 ZNF200P98182 395 aaPredicted RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 OTOP2Q7RTS6 562 aa21.06■□□□□ 0.96
CLN3-202ENST00000355477 RPUSD2Q8IZ73 545 aaKnown RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 DHX38Q92620 1227 aaKnown RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 GPRASP2Q96D09 838 aa21.06■□□□□ 0.96
CLN3-202ENST00000355477 UPF3BQ9BZI7 483 aaKnown RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 NCOA5Q9HCD5 579 aaKnown RBP21.06■□□□□ 0.96
CLN3-202ENST00000355477 H3BRB1 525 aa21.05■□□□□ 0.96
CLN3-202ENST00000355477 PITPNM1O00562 1244 aa21.05■□□□□ 0.96
CLN3-202ENST00000355477 NOP56O00567 594 aaKnown RBP21.05■□□□□ 0.96
CLN3-202ENST00000355477 IQCF3P0C7M6 154 aa21.05■□□□□ 0.96
CLN3-202ENST00000355477 CLK2P49760 499 aaKnown RBP21.05■□□□□ 0.96
CLN3-202ENST00000355477 DEFB128Q7Z7B8 93 aa21.05■□□□□ 0.96
CLN3-202ENST00000355477 CYP2W1Q8TAV3 490 aa21.05■□□□□ 0.96
CLN3-202ENST00000355477 TUT1Q9H6E5 874 aaKnown RBP21.05■□□□□ 0.96
CLN3-202ENST00000355477 JADE2Q9NQC1 790 aa21.05■□□□□ 0.96
CLN3-202ENST00000355477 SP4Q02446 784 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 BFSP2Q13515 415 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 MTMR1Q13613 665 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 ZNF697Q5TEC3 545 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 TEX2Q8IWB9 1127 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 RETREG2Q8NC44 543 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 GUCD1Q96NT3 240 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 TTYH1Q9H313 450 aaPredicted RBP21.04■□□□□ 0.96
CLN3-202ENST00000355477 SEMA6BQ9H3T3 888 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 PKD2L1Q9P0L9 805 aa21.04■□□□□ 0.96
CLN3-202ENST00000355477 RBAK-RBAKDNI3L0D1 243 aa21.03■□□□□ 0.96
CLN3-202ENST00000355477 FOSP01100 380 aaPredicted RBP21.03■□□□□ 0.96
CLN3-202ENST00000355477 TRIM50Q86XT4 487 aa21.03■□□□□ 0.96
CLN3-202ENST00000355477 GIMAP8Q8ND71 665 aaPredicted RBP21.03■□□□□ 0.96
CLN3-202ENST00000355477 WNT8BQ93098 351 aa21.03■□□□□ 0.96
CLN3-202ENST00000355477 CDHR1Q96JP9 859 aa21.03■□□□□ 0.96
CLN3-202ENST00000355477 ANO3Q9BYT9 981 aa21.03■□□□□ 0.96
CLN3-202ENST00000355477 EHMT1Q9H9B1 1298 aa21.03■□□□□ 0.96
CLN3-202ENST00000355477 IFNAR1P17181 557 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 PBX2P40425 430 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 UTP14CQ5TAP6 766 aaKnown RBP21.02■□□□□ 0.96
CLN3-202ENST00000355477 JAKMIP3Q5VZ66 844 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 CAGE1Q8TC20 777 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 MXRA8Q9BRK3 442 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 SLC26A6Q9BXS9 759 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 ZMYND12Q9H0C1 365 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 GLT8D2Q9H1C3 349 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 PDRG1Q9NUG6 133 aa21.02■□□□□ 0.96
CLN3-202ENST00000355477 GSTTP1A0A1W2PQM5 241 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 MAFGO15525 162 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 SMIM10L2AP0DMW4 78 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 SMIM10L2BP0DMW5 78 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 DNAJB2P25686 324 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 RFC2P35250 354 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 SREBF1P36956 1147 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 PTK7Q13308 1070 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 AP3B2Q13367 1082 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 GPNMBQ14956 572 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 TRIM71Q2Q1W2 868 aaKnown RBP21.01■□□□□ 0.95
CLN3-202ENST00000355477 AFAP1L1Q8TED9 768 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 ZNF274Q96GC6 653 aaPredicted RBP21.01■□□□□ 0.95
CLN3-202ENST00000355477 RNF26Q9BY78 433 aaPredicted RBP21.01■□□□□ 0.95
CLN3-202ENST00000355477 RNPEPQ9H4A4 650 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 KCNH7Q9NS40 1196 aa21.01■□□□□ 0.95
CLN3-202ENST00000355477 PTPRSQ13332 1948 aa21■□□□□ 0.95
CLN3-202ENST00000355477 ESYT2A0FGR8 921 aa21■□□□□ 0.95
CLN3-202ENST00000355477 PFKMP08237 780 aa21■□□□□ 0.95
CLN3-202ENST00000355477 ARP10275 920 aa21■□□□□ 0.95
CLN3-202ENST00000355477 CKBP12277 381 aa21■□□□□ 0.95
CLN3-202ENST00000355477 SELPP16109 830 aa21■□□□□ 0.95
CLN3-202ENST00000355477 HOXC8P31273 242 aa21■□□□□ 0.95
CLN3-202ENST00000355477 TCF7P36402 384 aaPredicted RBP21■□□□□ 0.95
CLN3-202ENST00000355477 AKAP17AQ02040 695 aaKnown RBP21■□□□□ 0.95
CLN3-202ENST00000355477 RBL2Q08999 1139 aa21■□□□□ 0.95
CLN3-202ENST00000355477 CCDC155Q8N6L0 562 aa21■□□□□ 0.95
CLN3-202ENST00000355477 PBX4Q9BYU1 374 aa21■□□□□ 0.95
CLN3-202ENST00000355477 EYSQ5T1H1 3165 aa21■□□□□ 0.95
CLN3-202ENST00000355477 C17orf102A2RUQ5 167 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 MEIS1O00470 390 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 STK3Q13188 491 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 CEP55Q53EZ4 464 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 TRAF7Q6Q0C0 670 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 LRRC8DQ7L1W4 858 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 SERINC5Q86VE9 423 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 CRYGNQ8WXF5 182 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 FTOQ9C0B1 505 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLN3-202ENST00000355477 MTIF3Q9H2K0 278 aaKnown RBP20.99■□□□□ 0.95
CLN3-202ENST00000355477 C6orf50Q9HD87 102 aa20.99■□□□□ 0.95
CLN3-202ENST00000355477 STXBP5LQ9Y2K9 1186 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms