RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ZSCAN22P10073 491 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 ACRP10323 421 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 IL1R1P14778 569 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 CASTP20810 708 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 GSTT1P30711 240 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 PRELPP51888 382 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 IQCB1Q15051 598 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 RSPO4Q2I0M5 234 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 SEZ6Q53EL9 994 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 CCDC84Q86UT8 332 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 RASGRP4Q8TDF6 673 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 NSUN4Q96CB9 384 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 KRTAP4-12Q9BQ66 201 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 RSRP1Q9BUV0 290 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 NOC4LQ9BVI4 516 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 PBX4Q9BYU1 374 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 IL17RBQ9NRM6 502 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 GJB4Q9NTQ9 266 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 BSDC1Q9NW68 430 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 CNPY2Q9Y2B0 182 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 MROH5Q6ZUA9 1318 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 MYH9P35579 1960 aaKnown RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 PDE2AO00408 941 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 IRS4O14654 1257 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 PRKAB2O43741 272 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 U2AF2P26368 475 aaKnown RBP eCLIP2.74□□□□□ -1.974e-7■■□□□ 12
VPS54-202ENST00000354504 GUCY1A2P33402 732 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 NEK4P51957 841 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 RHBDL3P58872 404 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 GPLD1P80108 840 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 CHRNDQ07001 517 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 RASA3Q14644 834 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 NCAPHQ15003 741 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 CPSF6Q16630 551 aaKnown RBP eCLIP2.74□□□□□ -1.97
VPS54-202ENST00000354504 HSP90AB4PQ58FF6 505 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 AGMOQ6ZNB7 445 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 KIAA0825Q8IV33 1275 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 FOXP4Q8IVH2 680 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 ZNF654Q8IZM8 581 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 LCORLQ8N3X6 602 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 NECAB1Q8N987 351 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 STAG1Q8WVM7 1258 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 ANAPC16Q96DE5 110 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 ZNF274Q96GC6 653 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 SPATA32Q96LK8 384 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 TCEANC2Q96MN5 208 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 CACNA2D2Q9NY47 1150 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 SOX13Q9UN79 622 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 LIMCH1Q9UPQ0 1083 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 GAKO14976 1311 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 SYNGAP1Q96PV0 1343 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 A0A087X0B3 334 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 DDX58O95786 925 aaKnown RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 PDE6AP16499 860 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 LIG1P18858 919 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 ALAS2P22557 587 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 GJB2P29033 226 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 POLR2BP30876 1174 aaKnown RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 GABPAQ06546 454 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 NFIXQ14938 502 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 DDB1Q16531 1140 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 MAP1SQ66K74 1059 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 CRYGNQ8WXF5 182 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 ANKS1AQ92625 1134 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 ACSBG1Q96GR2 724 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 PNMA5Q96PV4 448 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 RTFDC1Q9BY42 306 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 SOX17Q9H6I2 414 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 BRMS1Q9HCU9 246 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 C9orf78Q9NZ63 289 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 GGA1Q9UJY5 639 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 PCDHB10Q9UN67 800 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 AFF2P51816 1311 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 PATJQ8NI35 1801 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 TSC2P49815 1807 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 WDHD1O75717 1129 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 EDN3P14138 238 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 ATP2B1P20020 1258 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 ARID5AQ03989 594 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 NT5DC1Q5TFE4 455 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 PRR5LQ6MZQ0 368 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 FAM173BQ6P4H8 233 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 LRSAM1Q6UWE0 723 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 GK5Q6ZS86 529 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 Q6ZUG5 572 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 CHSY3Q70JA7 882 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 SIAH1Q8IUQ4 282 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 TRIM42Q8IWZ5 723 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 DHX40Q8IX18 779 aaKnown RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 STK11IPQ8N1F8 1099 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 CLASRPQ8N2M8 674 aaKnown RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 LILRB2Q8N423 598 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 CERS5Q8N5B7 392 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 TMEM102Q8N9M5 508 aaPredicted RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 TTC16Q8NEE8 873 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 OLIG1Q8TAK6 271 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 SLC7A3Q8WY07 619 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 P2RX7Q99572 595 aaKnown RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 UBE2OQ9C0C9 1292 aaKnown RBP2.74□□□□□ -1.97
VPS54-202ENST00000354504 DNAJC18Q9H819 358 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms