RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MSH4O15457 936 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 KLRC4O43908 158 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 SERPINC1P01008 464 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 GPS2Q13227 327 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 VGLL4Q14135 290 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 HAUS3Q68CZ6 603 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 CATSPERGQ6ZRH7 1159 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 ATG4CQ96DT6 458 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 NUDT12Q9BQG2 462 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 HOXC10Q9NYD6 342 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 SNCAIPQ9Y6H5 919 aa14.28□□□□□ -0.12
CLK3-201ENST00000345005 GLTPD2A6NH11 291 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 NFIBO00712 420 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 HOXA7P31268 230 aaPredicted RBP14.27□□□□□ -0.12
CLK3-201ENST00000345005 ASIC1P78348 528 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 SPIRE1Q08AE8 756 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 STIM1Q13586 685 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 MCM6Q14566 821 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 ARHGAP29Q52LW3 1261 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 CEP55Q53EZ4 464 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 KLHL10Q6JEL2 608 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 CNNM4Q6P4Q7 775 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 GPR161Q8N6U8 529 aaKnown RBP14.27□□□□□ -0.12
CLK3-201ENST00000345005 CYP2W1Q8TAV3 490 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 EXOC1Q9NV70 894 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 RWDD2AQ9UIY3 292 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 MYPNQ86TC9 1320 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 SYNRGQ9UMZ2 1314 aa14.27□□□□□ -0.12
CLK3-201ENST00000345005 PVALEFA0A1B0GWK0 134 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 ATP1A3P13637 1013 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 ZNF18P17022 549 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 SETQ01105 290 aaPredicted RBP14.27□□□□□ -0.13
CLK3-201ENST00000345005 ERCC6LQ2NKX8 1250 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 MUM1L1Q5H9M0 696 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 VSTM4Q8IW00 320 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 TRMT44Q8IYL2 757 aaKnown RBP14.27□□□□□ -0.13
CLK3-201ENST00000345005 SMYD4Q8IYR2 804 aaPredicted RBP14.27□□□□□ -0.13
CLK3-201ENST00000345005 TRERF1Q96PN7 1200 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 UIMC1Q96RL1 719 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 MED15Q96RN5 788 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 LOXHD1Q8IVV2 1947 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 RPTORQ8N122 1335 aa14.27□□□□□ -0.13
CLK3-201ENST00000345005 IQCA1LA6NCM1 817 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 MEIS1O00470 390 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 ATP2A1O14983 1001 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 STX10O60499 249 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 PPP1R2P41236 205 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 PRCPP42785 496 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 CLCN6P51797 869 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 PAK1Q13153 545 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 NIPA1Q7RTP0 329 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 ADSSL1Q8N142 457 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 KCTD17Q8N5Z5 321 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 GIMAP8Q8ND71 665 aaPredicted RBP14.26□□□□□ -0.13
CLK3-201ENST00000345005 SLC5A5Q92911 643 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 MAF1Q9H063 256 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 HOMER2Q9NSB8 354 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 KIAA1024Q9UPX6 916 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 CTNND2Q9UQB3 1225 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 FHOD1Q9Y613 1164 aa14.26□□□□□ -0.13
CLK3-201ENST00000345005 MYMKA6NI61 221 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 LOC285556D6RIA3 1793 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 ZRANB2O95218 330 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLK3-201ENST00000345005 PNMA6AP0CW24 399 aaPredicted RBP14.25□□□□□ -0.13
CLK3-201ENST00000345005 RPA1P27694 616 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 STAT3P40763 770 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 STX17P56962 302 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 UBXN2AP68543 259 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 PDE4DQ08499 809 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 ECM1Q16610 540 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 TKFCQ3LXA3 575 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 NCAPH2Q6IBW4 605 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 DLK2Q6UY11 383 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 KCNK18Q7Z418 384 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 TXLNBQ8N3L3 684 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 REPS2Q8NFH8 660 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 SYTL5Q8TDW5 730 aaPredicted RBP14.25□□□□□ -0.13
CLK3-201ENST00000345005 CDCA5Q96FF9 252 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 MXRA8Q9BRK3 442 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 BMP2KQ9NSY1 1161 aaPredicted RBP14.25□□□□□ -0.13
CLK3-201ENST00000345005 VAV3Q9UKW4 847 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 GDAQ9Y2T3 454 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 POTEB2H3BUK9 544 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 BCRP11274 1271 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 CASQ1P31415 396 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 CYP2C19P33261 490 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 RPS6P62753 249 aaKnown RBP14.25□□□□□ -0.13
CLK3-201ENST00000345005 LRCH2Q5VUJ6 765 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 PCNX4Q63HM2 1172 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 RNF207Q6ZRF8 634 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 UNC13DQ70J99 1090 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 ANKRD13AQ8IZ07 590 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 NELFBQ8WX92 580 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 DHTKD1Q96HY7 919 aaPredicted RBP14.25□□□□□ -0.13
CLK3-201ENST00000345005 POLR3CQ9BUI4 534 aaPredicted RBP14.25□□□□□ -0.13
CLK3-201ENST00000345005 RNF146Q9NTX7 359 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 ZNF446Q9NWS9 450 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 COL20A1Q9P218 1284 aa14.25□□□□□ -0.13
CLK3-201ENST00000345005 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLK3-201ENST00000345005 FRMPD4Q14CM0 1322 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms