RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 GBP6Q6ZN66 633 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 STAG2Q8N3U4 1231 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 TMEM260Q9NX78 707 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 SWSAP1Q6NVH7 229 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 SND1Q7KZF4 910 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP54-201ENST00000339859 GLTPD2A6NH11 291 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 LDHAP00338 332 aaKnown RBP11.15□□□□□ -0.62
USP54-201ENST00000339859 ATG4CQ96DT6 458 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 ICAM1P05362 532 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 QARSP47897 775 aaKnown RBP11.15□□□□□ -0.62
USP54-201ENST00000339859 PPIL2Q13356 520 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 ZBTB33Q86T24 672 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 TIGD1Q96MW7 591 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 GABBR1Q9UBS5 961 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 EIF3JO75822 258 aaKnown RBP11.15□□□□□ -0.62
USP54-201ENST00000339859 GAS8O95995 478 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 PTPREP23469 700 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 PPP2R3AQ06190 1150 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 SNW1Q13573 536 aaKnown RBP11.15□□□□□ -0.62
USP54-201ENST00000339859 IGSF22Q8N9C0 903 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 LSM14BQ9BX40 385 aaKnown RBP11.15□□□□□ -0.62
USP54-201ENST00000339859 IDI2Q9BXS1 227 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 SMARCAD1Q9H4L7 1026 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 AGTPBP1Q9UPW5 1226 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 IPO5O00410 1097 aaKnown RBP11.15□□□□□ -0.62
USP54-201ENST00000339859 DTNBO60941 627 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 URI1O94763 535 aaPredicted RBP11.15□□□□□ -0.62
USP54-201ENST00000339859 KCNJ6P48051 423 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 MYL7Q01449 175 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 CUL4AQ13619 759 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 KYAT1Q16773 422 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 SLC9C1Q4G0N8 1177 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 COMMD10Q9Y6G5 202 aa11.15□□□□□ -0.62
USP54-201ENST00000339859 DEFB115Q30KQ5 88 aa11.15□□□□□ -0.63
USP54-201ENST00000339859 SFMBT2Q5VUG0 894 aa11.15□□□□□ -0.63
USP54-201ENST00000339859 PROCA1Q8NCQ7 364 aaPredicted RBP11.15□□□□□ -0.63
USP54-201ENST00000339859 NSMCE1Q8WV22 266 aa11.15□□□□□ -0.63
USP54-201ENST00000339859 PSPC1Q8WXF1 523 aaKnown RBP11.15□□□□□ -0.63
USP54-201ENST00000339859 GCNAQ96QF7 691 aa11.15□□□□□ -0.63
USP54-201ENST00000339859 K7ERI5 159 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 C6orf222P0C671 652 aaPredicted RBP11.14□□□□□ -0.63
USP54-201ENST00000339859 NFIAQ12857 509 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 SEL1L2Q5TEA6 688 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 TSNARE1Q96NA8 513 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 TAB2Q9NYJ8 693 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 DYNC1LI2O43237 492 aaPredicted RBP11.14□□□□□ -0.63
USP54-201ENST00000339859 NLGN2Q8NFZ4 835 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 DYDC2Q96IM9 177 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 PCDHA10Q9Y5I2 948 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 CDC27P30260 824 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 NFX1Q12986 1120 aaKnown RBP11.14□□□□□ -0.63
USP54-201ENST00000339859 CYP26C1Q6V0L0 522 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 GSTA5Q7RTV2 222 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 SOCS4Q8WXH5 440 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 DHTKD1Q96HY7 919 aaPredicted RBP11.14□□□□□ -0.63
USP54-201ENST00000339859 TOPORSQ9NS56 1045 aaPredicted RBP11.14□□□□□ -0.63
USP54-201ENST00000339859 TRMT1Q9NXH9 659 aaKnown RBP11.14□□□□□ -0.63
USP54-201ENST00000339859 PCDHB6Q9Y5E3 794 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 MAFGO15525 162 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 DGKDQ16760 1214 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 GSDMAQ96QA5 445 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 MSTO1Q9BUK6 570 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 KCNJ18B7U540 433 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 SLC26A4O43511 780 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 PLCG1P19174 1290 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 KCNJ12Q14500 433 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 DCUN1D2Q6PH85 259 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 SRBD1Q8N5C6 995 aaKnown RBP11.14□□□□□ -0.63
USP54-201ENST00000339859 TMX1Q9H3N1 280 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 KIAA1468Q9P260 1216 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 TMX2Q9Y320 296 aa11.14□□□□□ -0.63
USP54-201ENST00000339859 LRMPQ12912 555 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 MCM6Q14566 821 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 MAPK6Q16659 721 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 MICAL1Q8TDZ2 1067 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 SCFD2Q8WU76 684 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 TMEM88BA6NKF7 163 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 STK10O94804 968 aaKnown RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 PDE6CP51160 858 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 LAMC2Q13753 1193 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 AXDND1Q5T1B0 1012 aaPredicted RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 ARRDC4Q8NCT1 418 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 NFE2L3Q9Y4A8 694 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 ANXA13P27216 316 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 NDUFA8P51970 172 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 MFAP3P55082 362 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 FANCCQ00597 558 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 EXOSC10Q01780 885 aaKnown RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 EPHA7Q15375 998 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 CEP55Q53EZ4 464 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 CCDC97Q96F63 343 aaPredicted RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 GMCL1Q96IK5 515 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 TUFT1Q9NNX1 390 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 DDTLA6NHG4 134 aaPredicted RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 ELF1P32519 619 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 STAT5BP51692 787 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 ARHGAP44Q17R89 818 aa11.13□□□□□ -0.63
USP54-201ENST00000339859 TWF2Q6IBS0 349 aaKnown RBP11.13□□□□□ -0.63
USP54-201ENST00000339859 PADI6Q6TGC4 694 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms