RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 ZBTB12Q9Y330 459 aaPredicted RBP9.04□□□□□ -0.96
HPS4-201ENST00000336873 USP54Q70EL1 1684 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 GOLGA6L7A0A1B0GV03 622 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 TESPA1A2RU30 521 aaPredicted RBP9.04□□□□□ -0.96
HPS4-201ENST00000336873 RSPH10B2B2RC85 870 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 RSPH10BP0C881 870 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 KRT5P13647 590 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 EXOC3L4Q17RC7 722 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 ODR4Q5SWX8 454 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 ARL6IP4Q66PJ3 421 aaKnown RBP9.04□□□□□ -0.96
HPS4-201ENST00000336873 SFR1Q86XK3 245 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 CEP57Q86XR8 500 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 DHTKD1Q96HY7 919 aaPredicted RBP9.04□□□□□ -0.96
HPS4-201ENST00000336873 ZNF512BQ96KM6 892 aaPredicted RBP9.04□□□□□ -0.96
HPS4-201ENST00000336873 PACSIN1Q9BY11 444 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 RASSF4Q9H2L5 321 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 LEMD3Q9Y2U8 911 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 DAGLAQ9Y4D2 1042 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 GJA3Q9Y6H8 435 aa9.04□□□□□ -0.96
HPS4-201ENST00000336873 E7EVH7 732 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 PPEF1O14829 653 aaPredicted RBP9.03□□□□□ -0.96
HPS4-201ENST00000336873 GAS7O60861 476 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 EPB41P11171 864 aaKnown RBP9.03□□□□□ -0.96
HPS4-201ENST00000336873 PDHBP11177 359 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 IFNAR2P48551 515 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 SETQ01105 290 aaPredicted RBP9.03□□□□□ -0.96
HPS4-201ENST00000336873 GRM4Q14833 912 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 MAN2A1Q16706 1144 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 ZC2HC1CQ53FD0 456 aaPredicted RBP9.03□□□□□ -0.96
HPS4-201ENST00000336873 FAM83BQ5T0W9 1011 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 FBXO11Q86XK2 927 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 PPM1KQ8N3J5 372 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 LIMA1Q9UHB6 759 aaKnown RBP9.03□□□□□ -0.96
HPS4-201ENST00000336873 USTQ9Y2C2 406 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 COL4A3BPQ9Y5P4 624 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 ADAMTSL3P82987 1691 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 KRIT1O00522 736 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 ERLIN2O94905 339 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 MCM3P25205 808 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 IRX5P78411 483 aaPredicted RBP9.03□□□□□ -0.96
HPS4-201ENST00000336873 COASYQ13057 564 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 MTM1Q13496 603 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 TMEM139Q8IV31 216 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 CERKQ8TCT0 537 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 BCAS3Q9H6U6 928 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 ANKZF1Q9H8Y5 726 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 ANKRD62A6NC57 917 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 ORC4O43929 436 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 TNFAIP3P21580 790 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 ATP2B4P23634 1241 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 NMT1P30419 496 aaKnown RBP9.03□□□□□ -0.96
HPS4-201ENST00000336873 PLCB3Q01970 1234 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 KCNH2Q12809 1159 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 TRIP13Q15645 432 aaPredicted RBP9.03□□□□□ -0.96
HPS4-201ENST00000336873 ABCB5Q2M3G0 1257 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 NBPF9Q3BBW0 867 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 NAALADL2Q58DX5 795 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 PRAMEF18Q5VWM3 479 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 FAM178BQ8IXR5 827 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 RETREG2Q8NC44 543 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 TBC1D16Q8TBP0 767 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 SEMA6BQ9H3T3 888 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.03□□□□□ -0.965e-8■■■■■ 32.9
HPS4-201ENST00000336873 SPATA31A5Q5VU36 1347 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 SPATA31A7Q8IWB4 1347 aa9.03□□□□□ -0.96
HPS4-201ENST00000336873 ARHGEF35A5YM69 484 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 SPOPO43791 374 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 C21orf2O43822 256 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 HSPA1LP34931 641 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 ACTN2P35609 894 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 PSMC6P62333 389 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 KRT71Q3SY84 523 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 LARGE2Q8N3Y3 721 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 HOOK2Q96ED9 719 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 MLXIPLQ9NP71 852 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 GINS2Q9Y248 185 aa9.02□□□□□ -0.96
HPS4-201ENST00000336873 RRP15Q9Y3B9 282 aaKnown RBP9.02□□□□□ -0.96
HPS4-201ENST00000336873 F5H6K3 240 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 CTNNA1P35221 906 aaKnown RBP9.02□□□□□ -0.97
HPS4-201ENST00000336873 KLRC3Q07444 240 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 DHX9Q08211 1270 aaKnown RBP9.02□□□□□ -0.97
HPS4-201ENST00000336873 SNX1Q13596 522 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 MESDQ14696 234 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 VPS72Q15906 364 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 AOC3Q16853 763 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 C2CD6Q53TS8 623 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 CPLX4Q7Z7G2 160 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 GJD4Q96KN9 370 aaPredicted RBP9.02□□□□□ -0.97
HPS4-201ENST00000336873 ANO3Q9BYT9 981 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 MTMR4Q9NYA4 1195 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 GCNT4Q9P109 453 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 HDAC9Q9UKV0 1011 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 FRMD4BQ9Y2L6 1034 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 ATP8A1Q9Y2Q0 1164 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 BCL9O00512 1426 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 MYBL2P10244 700 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 HERVK_113P62684 666 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 KCNA1Q09470 495 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 CCDC93Q567U6 631 aa9.02□□□□□ -0.97
HPS4-201ENST00000336873 HAUS3Q68CZ6 603 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms