RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 METTL7BQ6UX53 244 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 SLC39A5Q6ZMH5 540 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 GIMAP8Q8ND71 665 aaPredicted RBP18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 DPF3Q92784 378 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 TNFRSF25Q93038 417 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 AGO4Q9HCK5 861 aaKnown RBP18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 DNAH12Q6ZR08 3092 aa18.06■□□□□ 0.48
CCDC28A-201ENST00000332797 NOP56O00567 594 aaKnown RBP18.06■□□□□ 0.48
CCDC28A-201ENST00000332797 EDIL3O43854 480 aa18.06■□□□□ 0.48
CCDC28A-201ENST00000332797 CABYRO75952 493 aa18.06■□□□□ 0.48
CCDC28A-201ENST00000332797 PURAQ00577 322 aaKnown RBP18.06■□□□□ 0.48
CCDC28A-201ENST00000332797 DGKDQ16760 1214 aa18.06■□□□□ 0.48
CCDC28A-201ENST00000332797 LETM2Q2VYF4 491 aa18.06■□□□□ 0.48
CCDC28A-201ENST00000332797 UIMC1Q96RL1 719 aa18.06■□□□□ 0.48
CCDC28A-201ENST00000332797 ALPK3Q96L96 1907 aa18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 ELP1O95163 1332 aa18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 KPNA6O60684 536 aa18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 TDP2O95551 362 aa18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 ITGB3BPQ13352 177 aaPredicted RBP18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 GNL2Q13823 731 aaKnown RBP18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 NEK8Q86SG6 692 aa18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 SDF4Q9BRK5 362 aa18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 ZNF577Q9BSK1 485 aa18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 MTG1Q9BT17 334 aaPredicted RBP18.05■□□□□ 0.48
CCDC28A-201ENST00000332797 A0A0U1RQG5 324 aaPredicted RBP18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 ZNF286BP0CG31 522 aa18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 RTP1P59025 263 aa18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 PSMC6P62333 389 aa18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 LENG9Q96B70 501 aa18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 GPR20Q99678 358 aa18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 JPH1Q9HDC5 661 aaPredicted RBP18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 FOXD4L1Q9NU39 408 aa18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 ATP11BQ9Y2G3 1177 aa18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 TELO2Q9Y4R8 837 aa18.04■□□□□ 0.48
CCDC28A-201ENST00000332797 NFASCO94856 1347 aa18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 H3BQV1 296 aa18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 DDX39AO00148 427 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 IPO5O00410 1097 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 EVI5O60447 810 aa18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 CHMP4BP1P59074 171 aa18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 SNX17Q15036 470 aa18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 TRIM60Q495X7 471 aa18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 C7orf61Q8IZ16 206 aa18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 SLC9A2Q9UBY0 812 aa18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 DDX25Q9UHL0 483 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-201ENST00000332797 CYP3A7-CYP3A51PA0A087WV96 503 aa18.02■□□□□ 0.48
CCDC28A-201ENST00000332797 CCNT1O60563 726 aaKnown RBP18.02■□□□□ 0.48
CCDC28A-201ENST00000332797 HOXD8P13378 290 aaPredicted RBP18.02■□□□□ 0.48
CCDC28A-201ENST00000332797 CYP3A7P24462 503 aa18.02■□□□□ 0.48
CCDC28A-201ENST00000332797 ITGA7Q13683 1181 aa18.02■□□□□ 0.48
CCDC28A-201ENST00000332797 Q4G0T1 1027 aa18.02■□□□□ 0.48
CCDC28A-201ENST00000332797 MOXD1Q6UVY6 613 aa18.02■□□□□ 0.48
CCDC28A-201ENST00000332797 FOXP1Q9H334 677 aaPredicted RBP18.02■□□□□ 0.48
CCDC28A-201ENST00000332797 KIF28PB7ZC32 967 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 ARVCFO00192 962 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 MSH4O15457 936 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 PQBP1O60828 265 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 PPFIA4O75335 1185 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 C1orf53Q5VUE5 145 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 LARP1BQ659C4 914 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 MCTP1Q6DN14 999 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 PPP1R13LQ8WUF5 828 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 INTS4Q96HW7 963 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 MBOAT7Q96N66 472 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 NAP1L4Q99733 375 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 GRIN2DO15399 1336 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 SLC37A4O43826 429 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 LGALS2P05162 132 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 GCFC2P16383 781 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 TCF7P36402 384 aaPredicted RBP18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 UTP14CQ5TAP6 766 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 PPP4R3AQ6IN85 833 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 NOSTRINQ8IVI9 506 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 SEPT1Q8WYJ6 367 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 KAT2BQ92831 832 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 TBC1D22BQ9NU19 505 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 TCEAL9Q9UHQ7 104 aa18.01■□□□□ 0.47
CCDC28A-201ENST00000332797 GSTTP1A0A1W2PQM5 241 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 DHX15O43143 795 aaKnown RBP18■□□□□ 0.47
CCDC28A-201ENST00000332797 F2P00734 622 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 ATP2B1P20020 1258 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 PSEN2P49810 448 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 ACTR2P61160 394 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 TLE2Q04725 743 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 NBPF20Q3BBV1 942 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 FAM47CQ5HY64 1035 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 TRIM50Q86XT4 487 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 SLC43A3Q8NBI5 491 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 GJA10Q969M2 543 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 KATNAL1Q9BW62 490 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 SCN10AQ9Y5Y9 1956 aa18■□□□□ 0.47
CCDC28A-201ENST00000332797 MROH7Q68CQ1 1323 aa17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 GAS7O60861 476 aa17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 CCNE2O96020 404 aa17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 HSP90AA1P07900 732 aaKnown RBP17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 U2AF2P26368 475 aaKnown RBP eCLIP17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 CDK7P50613 346 aa17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 MFSD10Q14728 455 aa17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 ETNPPLQ8TBG4 499 aa17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 SLC5A5Q92911 643 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms