RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 RPS6KA1Q15418 735 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 FAM83BQ5T0W9 1011 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 DEFB132Q7Z7B7 95 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 FAM169AQ9Y6X4 670 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 PKD1L3Q7Z443 1732 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 PALM3A6NDB9 673 aaPredicted RBP11.57□□□□□ -0.56
COL3A1-202ENST00000317840 ZSCAN5CA6NGD5 496 aaPredicted RBP11.57□□□□□ -0.56
COL3A1-202ENST00000317840 ATP2C2O75185 946 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 GDF11O95390 407 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 AARSP49588 968 aaKnown RBP eCLIP11.57□□□□□ -0.56
COL3A1-202ENST00000317840 MRPL12P52815 198 aaKnown RBP11.57□□□□□ -0.56
COL3A1-202ENST00000317840 USH1GQ495M9 461 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 VPS36Q86VN1 386 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 GPBP1Q86WP2 473 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 EFCAB13Q8IY85 973 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 GLIS3Q8NEA6 775 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 POLLQ9UGP5 575 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 TSKSQ9UJT2 592 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 BAZ2AQ9UIF9 1905 aaKnown RBP11.57□□□□□ -0.56
COL3A1-202ENST00000317840 STRCP1A6NGW2 1772 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 COL18A1P39060 1754 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 SLURP2P0DP57 97 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 CARSP49589 748 aaKnown RBP11.57□□□□□ -0.56
COL3A1-202ENST00000317840 SNAP25P60880 206 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 PRKG1Q13976 671 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 ARL8AQ96BM9 186 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 MTMR8Q96EF0 704 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 TRIM31Q9BZY9 425 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 NUP188Q5SRE5 1749 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 ZBTB7AO95365 584 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 APBA1Q02410 837 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 IFFO1Q0D2I5 559 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 CENPPQ6IPU0 288 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 KCTD1Q719H9 257 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 TADA2BQ86TJ2 420 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 MSL3Q8N5Y2 521 aaKnown RBP11.56□□□□□ -0.56
COL3A1-202ENST00000317840 LRRC15Q8TF66 581 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 UBLCP1Q8WVY7 318 aaPredicted RBP11.56□□□□□ -0.56
COL3A1-202ENST00000317840 GOPCQ9HD26 462 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 PPANQ9NQ55 473 aaKnown RBP11.56□□□□□ -0.56
COL3A1-202ENST00000317840 A0A087WUV0 522 aaPredicted RBP11.56□□□□□ -0.56
COL3A1-202ENST00000317840 PVALEFA0A1B0GWK0 134 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 A0A1W2PQJ5 194 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 SLC37A4O43826 429 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 GRB10Q13322 594 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 GBP6Q6ZN66 633 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.56□□□□□ -0.56
COL3A1-202ENST00000317840 MMGT1Q8N4V1 131 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 SPZ1Q9BXG8 430 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 GOLPH3Q9H4A6 298 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 RIC8AQ9NPQ8 531 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 MYH6P13533 1939 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 PARP4Q9UKK3 1724 aaKnown RBP11.56□□□□□ -0.56
COL3A1-202ENST00000317840 E9PMD0 336 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 CORO7P57737 925 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 AOC3Q16853 763 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 PDXDC1Q6P996 788 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 RAD54LQ92698 747 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 NUDT12Q9BQG2 462 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 TTYH3Q9C0H2 523 aa11.56□□□□□ -0.56
COL3A1-202ENST00000317840 COL1A1P02452 1464 aaPredicted RBP11.55□□□□□ -0.56
COL3A1-202ENST00000317840 FIGNQ5HY92 759 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 SLC10A5Q5PT55 438 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 DAGLBQ8NCG7 672 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 PROCA1Q8NCQ7 364 aaPredicted RBP11.55□□□□□ -0.56
COL3A1-202ENST00000317840 NUCKS1Q9H1E3 243 aaKnown RBP11.55□□□□□ -0.56
COL3A1-202ENST00000317840 CAPN7Q9Y6W3 813 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 SERPING1P05155 500 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 NR2F2P24468 414 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 KLRC1P26715 233 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 USP8P40818 1118 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 DDR1Q08345 913 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 SF3A3Q12874 501 aaKnown RBP eCLIP11.55□□□□□ -0.56
COL3A1-202ENST00000317840 COASYQ13057 564 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 MICALCLQ6ZW33 695 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 PSTPIP2Q9H939 334 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 BCS1LQ9Y276 419 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 RASSF10A6NK89 507 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 E7EVH7 732 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 PRPF6O94906 941 aaKnown RBP11.55□□□□□ -0.56
COL3A1-202ENST00000317840 ADRA2BP18089 450 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 KCTD19Q17RG1 926 aaPredicted RBP11.55□□□□□ -0.56
COL3A1-202ENST00000317840 ALS2CLQ60I27 953 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 B4GALNT4Q76KP1 1039 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 DHX37Q8IY37 1157 aaKnown RBP11.55□□□□□ -0.56
COL3A1-202ENST00000317840 CUL5Q93034 780 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 ZIM3Q96PE6 472 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 AP1M1Q9BXS5 423 aa11.55□□□□□ -0.56
COL3A1-202ENST00000317840 TDRD3Q9H7E2 651 aaKnown RBP11.55□□□□□ -0.56
COL3A1-202ENST00000317840 ROBO1Q9Y6N7 1651 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 ECM2O94769 699 aaPredicted RBP11.54□□□□□ -0.56
COL3A1-202ENST00000317840 NPR1P16066 1061 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 CDR1P51861 262 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 GUCY1A3Q02108 690 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 SEMA3FQ13275 785 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 SLC35G1Q2M3R5 365 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 SLC27A3Q5K4L6 730 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 HAUS3Q68CZ6 603 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 GPATCH11Q8N954 259 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 TSEN2Q8NCE0 465 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms