RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 RETREG2Q8NC44 543 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 DAGLBQ8NCG7 672 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.11□□□□□ -0.63
LIG3-201ENST00000262327 MTFR1LQ9H019 292 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 CD209Q9NNX6 404 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 SAMM50Q9Y512 469 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 TARSL2A2RTX5 802 aaKnown RBP11.11□□□□□ -0.63
LIG3-201ENST00000262327 C6orf229H3BNL8 230 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 TRAF5O00463 557 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 MARCH6O60337 910 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 SLC16A2P36021 539 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 GUCY2FP51841 1108 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 DPP8Q6V1X1 898 aaPredicted RBP11.11□□□□□ -0.63
LIG3-201ENST00000262327 COA1Q9GZY4 146 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 VIPAS39Q9H9C1 493 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 FAM184BQ9ULE4 1060 aa11.11□□□□□ -0.63
LIG3-201ENST00000262327 ANO9A1A5B4 782 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 EDIL3O43854 480 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 MYL1P05976 194 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 MCM3P25205 808 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 GNA11P29992 359 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 CCDC70Q6NSX1 233 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 AENQ8WTP8 325 aaKnown RBP11.1□□□□□ -0.63
LIG3-201ENST00000262327 AK8Q96MA6 479 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 LAD1O00515 517 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 KRT14P02533 472 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 FAM153BP0C7A2 387 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 POLR2FP61218 127 aaKnown RBP11.1□□□□□ -0.63
LIG3-201ENST00000262327 KCNMA1Q12791 1236 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 MAN2A1Q16706 1144 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 FAM153CQ494X1 144 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 CCDC40Q4G0X9 1142 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 HAUS3Q68CZ6 603 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 PACS2Q86VP3 889 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 MSL3Q8N5Y2 521 aaKnown RBP11.1□□□□□ -0.63
LIG3-201ENST00000262327 TLR10Q9BXR5 811 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 PACSIN1Q9BY11 444 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 FAM153AQ9UHL3 310 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 POLD1P28340 1107 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 CHRNA5P30532 468 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 CARSP49589 748 aaKnown RBP11.1□□□□□ -0.63
LIG3-201ENST00000262327 TTBK2Q6IQ55 1244 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 C8orf74Q6P047 294 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 BAP1Q92560 729 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 ANKS1AQ92625 1134 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 RPGRIP1Q96KN7 1286 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 RTFDC1Q9BY42 306 aaPredicted RBP11.1□□□□□ -0.63
LIG3-201ENST00000262327 TSGA10Q9BZW7 698 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 CUEDC2Q9H467 287 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 NFU1Q9UMS0 254 aa11.1□□□□□ -0.63
LIG3-201ENST00000262327 PPFIA4O75335 1185 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 GLI1P08151 1106 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 IRAK1P51617 712 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 GNGT1P63211 74 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 KLHDC7AQ5VTJ3 777 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 GALNT17Q6IS24 598 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 UNC13DQ70J99 1090 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 C7orf43Q8WVR3 580 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 ALS2CR12Q96Q35 445 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 LSM14BQ9BX40 385 aaKnown RBP11.09□□□□□ -0.63
LIG3-201ENST00000262327 ZC3H12CQ9C0D7 883 aaKnown RBP11.09□□□□□ -0.63
LIG3-201ENST00000262327 HYOU1Q9Y4L1 999 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 MAST2Q6P0Q8 1798 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 DLEC1Q9Y238 1755 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 KIF13BQ9NQT8 1826 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 A0A1W2PQJ5 194 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 E9PMD0 336 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 PALMO75781 387 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 PAFAH1B1P43034 410 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 RAPGEF1Q13905 1077 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 LRRC55Q6ZSA7 311 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 BCAS4Q8TDM0 211 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 TBC1D22AQ8WUA7 517 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 SPZ1Q9BXG8 430 aa11.09□□□□□ -0.63
LIG3-201ENST00000262327 ZEB2O60315 1214 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 TLR2O60603 784 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 LIG3P49916 1009 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 TGFB2P61812 414 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 GSTO1P78417 241 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 GUCY2DQ02846 1103 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 EHHADHQ08426 723 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 PDCLQ13371 301 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 TTMPQ5BVD1 217 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 IQCEQ6IPM2 695 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 PDXDC1Q6P996 788 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 MMGT1Q8N4V1 131 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 TBC1D5Q92609 795 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 RAD54LQ92698 747 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 MTMR9Q96QG7 549 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 RUFY1Q96T51 708 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 EPB41L5Q9HCM4 733 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 STIM2Q9P246 746 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 ADAMTS1Q9UHI8 967 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 RPS6KA5O75582 802 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 KLRC1P26715 233 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 KRT79Q5XKE5 535 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 ZNF662Q6ZS27 426 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 KLHL7Q8IXQ5 586 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 MICALL1Q8N3F8 863 aa11.08□□□□□ -0.64
LIG3-201ENST00000262327 FAM133AQ8N9E0 248 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms