RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 HS3ST6Q96QI5 342 aa11.99□□□□□ -0.49
VPS50-201ENST00000251739 RIOX1Q9H6W3 641 aa11.99□□□□□ -0.49
VPS50-201ENST00000251739 VAT1LQ9HCJ6 419 aa11.99□□□□□ -0.49
VPS50-201ENST00000251739 PCDHA1Q9Y5I3 950 aa11.99□□□□□ -0.49
VPS50-201ENST00000251739 POTEB3A0JP26 581 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 CYTH3O43739 400 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 DHX16O60231 1041 aaKnown RBP11.98□□□□□ -0.49
VPS50-201ENST00000251739 ZNF286BP0CG31 522 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 IGFBP4P22692 258 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 HOXC8P31273 242 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 PSEN2P49810 448 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 WDR5P61964 334 aaKnown RBP11.98□□□□□ -0.49
VPS50-201ENST00000251739 PTH1RQ03431 593 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 LAMC2Q13753 1193 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 PGM5Q15124 567 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 CCDC85BQ15834 202 aaPredicted RBP11.98□□□□□ -0.49
VPS50-201ENST00000251739 TCTN1Q2MV58 587 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 MYSM1Q5VVJ2 828 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 POTEBQ6S5H4 581 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 LRRC8DQ7L1W4 858 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 CHST3Q7LGC8 479 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 VSIG10LQ86VR7 867 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 PPM1EQ8WY54 764 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 WNT8BQ93098 351 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 SENP2Q9HC62 589 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 HDAC6Q9UBN7 1215 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 NOD1Q9Y239 953 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 MTCH2Q9Y6C9 303 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 MRVI1Q9Y6F6 885 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 KAT6AQ92794 2004 aa11.98□□□□□ -0.49
VPS50-201ENST00000251739 COL4A6Q14031 1691 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 TNFRSF10AO00220 468 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 NBNO60934 754 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 PARNO95453 639 aaKnown RBP11.97□□□□□ -0.49
VPS50-201ENST00000251739 CKBP12277 381 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 UBA1P22314 1058 aaKnown RBP11.97□□□□□ -0.49
VPS50-201ENST00000251739 CHMLP26374 656 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 HOXA13P31271 388 aaPredicted RBP11.97□□□□□ -0.49
VPS50-201ENST00000251739 ANTXR2P58335 489 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 MRPS5P82675 430 aaKnown RBP11.97□□□□□ -0.49
VPS50-201ENST00000251739 HIC1Q14526 733 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 MBTPS1Q14703 1052 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 KIAA0753Q2KHM9 967 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 HSDL1Q3SXM5 330 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 TYW1BQ6NUM6 668 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 KCNV1Q6PIU1 500 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 SPRED2Q7Z698 418 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 ADAMTS19Q8TE59 1207 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 YTHDC1Q96MU7 727 aaKnown RBP11.97□□□□□ -0.49
VPS50-201ENST00000251739 PIGSQ96S52 555 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 KATNAL1Q9BW62 490 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 NLRC5Q86WI3 1866 aa11.97□□□□□ -0.49
VPS50-201ENST00000251739 ATG2AQ2TAZ0 1938 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 RFXAPO00287 272 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 SGSM2O43147 1006 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 LPXNO60711 386 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 PPFIA4O75335 1185 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 TGFB3P10600 412 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 DEFB103AP81534 67 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 SP2Q02086 613 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 PTK7Q13308 1070 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 CELF3Q5SZQ8 465 aaKnown RBP11.96□□□□□ -0.49
VPS50-201ENST00000251739 SMYD5Q6GMV2 418 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 CNKSR3Q6P9H4 555 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 DHX37Q8IY37 1157 aaKnown RBP11.96□□□□□ -0.49
VPS50-201ENST00000251739 C7orf31Q8N865 590 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 GPKOWQ92917 476 aaPredicted RBP eCLIP11.96□□□□□ -0.49
VPS50-201ENST00000251739 ZDHHC16Q969W1 377 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 INPP4AQ96PE3 977 aaPredicted RBP11.96□□□□□ -0.49
VPS50-201ENST00000251739 C16orf70Q9BSU1 422 aa11.96□□□□□ -0.49
VPS50-201ENST00000251739 FTOQ9C0B1 505 aaKnown RBP eCLIP11.96□□□□□ -0.49
VPS50-201ENST00000251739 PNMA6FA0A0J9YX94 578 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 LCHNA4D1U4 455 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 E7EWF7 191 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 IFIT3O14879 490 aaKnown RBP11.95□□□□□ -0.5
VPS50-201ENST00000251739 GGPS1O95749 300 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 MYCLP12524 364 aaPredicted RBP11.95□□□□□ -0.5
VPS50-201ENST00000251739 KCNJ6P48051 423 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 CHMP4BP1P59074 171 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 TRDNQ13061 729 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 TRAF1Q13077 416 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 SERINC5Q86VE9 423 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 HOMER1Q86YM7 354 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 MB21D2Q8IYB1 491 aaPredicted RBP11.95□□□□□ -0.5
VPS50-201ENST00000251739 ALG1Q9BT22 464 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 MYO7AQ13402 2215 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 RALGAPA2Q2PPJ7 1873 aa11.95□□□□□ -0.5
VPS50-201ENST00000251739 ABHD14A-ACY1A0A1B0GW23 586 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 GCOM1H8Y6P7 765 aaPredicted RBP11.94□□□□□ -0.5
VPS50-201ENST00000251739 RBAK-RBAKDNI3L0D1 243 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 GJB5O95377 273 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 POLR2MP0CAP2 368 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 BMP1P13497 986 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 CCND2P30279 289 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 ICAM3P32942 547 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 MRPS9P82933 396 aaKnown RBP11.94□□□□□ -0.5
VPS50-201ENST00000251739 ZNF200P98182 395 aaPredicted RBP11.94□□□□□ -0.5
VPS50-201ENST00000251739 TFF2Q03403 129 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 SEMA3FQ13275 785 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 GRB10Q13322 594 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms