RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 POTEBQ6S5H4 581 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 SIAH1Q8IUQ4 282 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 CRYGNQ8WXF5 182 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 RUFY1Q96T51 708 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 KCTD10Q9H3F6 313 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 C10orf71Q711Q0 1435 aa11.2□□□□□ -0.62
COPB1-201ENST00000249923 TARSL2A2RTX5 802 aaKnown RBP11.19□□□□□ -0.62
COPB1-201ENST00000249923 C6orf229H3BNL8 230 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 TTLL1O95922 423 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 PLCG2P16885 1265 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 HOXD13P35453 343 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 CACNB3P54284 484 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 RNASE9P60153 205 aaKnown RBP11.19□□□□□ -0.62
COPB1-201ENST00000249923 TTC31Q49AM3 519 aaPredicted RBP11.19□□□□□ -0.62
COPB1-201ENST00000249923 CCNI2Q6ZMN8 369 aaPredicted RBP11.19□□□□□ -0.62
COPB1-201ENST00000249923 SCFD1Q8WVM8 642 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 LRRC63Q05C16 580 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 KIF5AQ12840 1032 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 HYIQ5T013 277 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 KLHDC7AQ5VTJ3 777 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 CDC42EP5Q6NZY7 148 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 DNAAF5Q86Y56 855 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 AENQ8WTP8 325 aaKnown RBP11.19□□□□□ -0.62
COPB1-201ENST00000249923 MS4A14Q96JA4 679 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 OSBPL9Q96SU4 736 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 SELENOOQ9BVL4 669 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 SERPINB13Q9UIV8 391 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 ABCB11O95342 1321 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 hCG_1984214I3L0E3 225 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 MED24O75448 989 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 PSMC6P62333 389 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 TUBB4BP68371 445 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 SLC7A5Q01650 507 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 ZNF713Q8N859 430 aaPredicted RBP11.19□□□□□ -0.62
COPB1-201ENST00000249923 FAM204AQ9H8W3 233 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 KCNMB3Q9NPA1 279 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 NLRC4Q9NPP4 1024 aa11.19□□□□□ -0.62
COPB1-201ENST00000249923 ZNHIT6Q9NWK9 470 aaKnown RBP11.19□□□□□ -0.62
COPB1-201ENST00000249923 RNF40O75150 1001 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 GGCXP38435 758 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 SNAP25P60880 206 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 JAG1P78504 1218 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 SPATA4Q8NEY3 305 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 RBM17Q96I25 401 aaKnown RBP11.18□□□□□ -0.62
COPB1-201ENST00000249923 PACSIN1Q9BY11 444 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 JRKLQ9Y4A0 524 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 RBAK-RBAKDNI3L0D1 243 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 MEIS2O14770 477 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 ZBTB5O15062 677 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 PJA2O43164 708 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 BUB1O43683 1085 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 SSBP05455 408 aaKnown RBP eCLIP11.18□□□□□ -0.62
COPB1-201ENST00000249923 RASSF7Q02833 373 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 DOK7Q18PE1 504 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 RNF187Q5TA31 235 aaPredicted RBP11.18□□□□□ -0.62
COPB1-201ENST00000249923 SH3BP5LQ7L8J4 393 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 NELFCDQ8IXH7 590 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 LENG9Q96B70 501 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 RBBP6Q7Z6E9 1792 aaKnown RBP11.18□□□□□ -0.62
COPB1-201ENST00000249923 ZSCAN5CA6NGD5 496 aaPredicted RBP11.18□□□□□ -0.62
COPB1-201ENST00000249923 BBOX1O75936 387 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 CYP11B2P19099 503 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 KRT79Q5XKE5 535 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 HAUS3Q68CZ6 603 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 TRIM59Q8IWR1 403 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 EHBP1Q8NDI1 1231 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 FAM71BQ8TC56 605 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 TBC1D22AQ8WUA7 517 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 IKZF4Q9H2S9 585 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 ACBD3Q9H3P7 528 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 VIPAS39Q9H9C1 493 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 KIAA1024Q9UPX6 916 aa11.18□□□□□ -0.62
COPB1-201ENST00000249923 POTEFA5A3E0 1075 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 POTEIP0CG38 1075 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 PPP1R2P41236 205 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 QRICH1Q2TAL8 776 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 POTEGQ6S5H5 508 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 POTEEQ6S8J3 1075 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 SLC30A10Q6XR72 485 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 ZC3H3Q8IXZ2 948 aaKnown RBP11.17□□□□□ -0.62
COPB1-201ENST00000249923 TRIM58Q8NG06 486 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 RBM12Q9NTZ6 932 aaKnown RBP11.17□□□□□ -0.62
COPB1-201ENST00000249923 USP40Q9NVE5 1235 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 PANK4Q9NVE7 773 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 FRMD3A2A2Y4 597 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 OPLAHO14841 1288 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 ACTN2P35609 894 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 SLC12A3P55017 1021 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 PTPROQ16827 1216 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 TMEM266Q2M3C6 531 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 FAM83BQ5T0W9 1011 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 LRRC31Q6UY01 552 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 MYOCDQ8IZQ8 938 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 PROM2Q8N271 834 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 MMGT1Q8N4V1 131 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 TSEN2Q8NCE0 465 aaKnown RBP11.17□□□□□ -0.62
COPB1-201ENST00000249923 CDK5RAP3Q96JB5 506 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 PSTPIP2Q9H939 334 aa11.17□□□□□ -0.62
COPB1-201ENST00000249923 AJAP1Q9UKB5 411 aaPredicted RBP11.17□□□□□ -0.62
COPB1-201ENST00000249923 SAMM50Q9Y512 469 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms