RNA–Protein interactions for RNA: ENST00000238146.8

DDX55-201, Transcript of DEAD-box helicase 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX55, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-201ENST00000238146 SOGA3Q5TF21 947 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 GPATCH11Q8N954 259 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 SH3RF3Q8TEJ3 882 aaPredicted RBP17.06■□□□□ 0.32
DDX55-201ENST00000238146 PLCB1Q9NQ66 1216 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 ADAMTS1Q9UHI8 967 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 SRRM3A6NNA2 597 aaPredicted RBP17.06■□□□□ 0.32
DDX55-201ENST00000238146 E7EVH7 732 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 TRAF5O00463 557 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 ECHS1P30084 290 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 HPDP32754 393 aaPredicted RBP17.06■□□□□ 0.32
DDX55-201ENST00000238146 ERVK-9P63128 1117 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 DDR1Q08345 913 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 CCDC40Q4G0X9 1142 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 RNF187Q5TA31 235 aaPredicted RBP17.06■□□□□ 0.32
DDX55-201ENST00000238146 PPP4R3AQ6IN85 833 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 USP17L2Q6R6M4 530 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 MYOCDQ8IZQ8 938 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 REXO1Q8N1G1 1221 aaKnown RBP17.06■□□□□ 0.32
DDX55-201ENST00000238146 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.06■□□□□ 0.32
DDX55-201ENST00000238146 ISCUQ9H1K1 167 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 VAT1LQ9HCJ6 419 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 GGA2Q9UJY4 613 aa17.06■□□□□ 0.32
DDX55-201ENST00000238146 SLC37A4O43826 429 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 RASA1P20936 1047 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 ARID5AQ03989 594 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 IFT88Q13099 833 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 C6orf89Q6UWU4 347 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 TXNRD3Q86VQ6 643 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 ZNF652Q9Y2D9 606 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 MYH14Q7Z406 1995 aaKnown RBP17.05■□□□□ 0.32
DDX55-201ENST00000238146 EDIL3O43854 480 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 HSD17B3P37058 310 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 ACTN3Q08043 901 aaPredicted RBP17.05■□□□□ 0.32
DDX55-201ENST00000238146 HLTFQ14527 1009 aaKnown RBP eCLIP17.05■□□□□ 0.32
DDX55-201ENST00000238146 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.05■□□□□ 0.32
DDX55-201ENST00000238146 PIGSQ96S52 555 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 VCPKMTQ9H867 229 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 KANSL2Q9H9L4 492 aa17.05■□□□□ 0.32
DDX55-201ENST00000238146 H0YGN5 161 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 TDP2O95551 362 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 RAPGEF1Q13905 1077 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 ENOX2Q16206 610 aaKnown RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 LRIG3Q6UXM1 1119 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 SNX29Q8TEQ0 813 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 CENPHQ9H3R5 247 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 PPANQ9NQ55 473 aaKnown RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 NFS1Q9Y697 457 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 XIRP1Q702N8 1843 aaKnown RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 GOLGA6L10A6NI86 522 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 RPS8P62241 208 aaKnown RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 SETQ01105 290 aaPredicted RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 KLHL30Q0D2K2 578 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 UAP1Q16222 522 aaPredicted RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 TMEM266Q2M3C6 531 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 FAM133AQ8N9E0 248 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 EIF1ADQ8N9N8 165 aaKnown RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 OR2W6PQ8NHA6 318 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 DNAJC19Q96DA6 116 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 SEC63Q9UGP8 760 aaKnown RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 KCNK3O14649 394 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 HOXA7P31268 230 aaPredicted RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 COASYQ13057 564 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 PDIA5Q14554 519 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 TMEM119Q4V9L6 283 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 CCDC13Q8IYE1 715 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 ARFGAP2Q8N6H7 521 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 TAF4BQ92750 862 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 CYFIP2Q96F07 1278 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 A1CFQ9NQ94 594 aaKnown RBP17.04■□□□□ 0.32
DDX55-201ENST00000238146 AIPL1Q9NZN9 384 aa17.04■□□□□ 0.32
DDX55-201ENST00000238146 GCOM1H8Y6P7 765 aaPredicted RBP17.03■□□□□ 0.32
DDX55-201ENST00000238146 MYZAPP0CAP1 466 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 MAP2K2P36507 400 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 SMTNP53814 917 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 RPS6KA1Q15418 735 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 ECM1Q16610 540 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 KRT79Q5XKE5 535 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 TRIM59Q8IWR1 403 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 SCFD2Q8WU76 684 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 TGFBRAP1Q8WUH2 860 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 FGFBP2Q9BYJ0 223 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 SLC12A6Q9UHW9 1150 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 CES2O00748 559 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 PPARDQ03181 441 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 SPTY2D1Q68D10 685 aaPredicted RBP17.03■□□□□ 0.32
DDX55-201ENST00000238146 CLEC4GQ6UXB4 293 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 DDX42Q86XP3 938 aaKnown RBP eCLIP17.03■□□□□ 0.32
DDX55-201ENST00000238146 ACSBG1Q96GR2 724 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 JPH2Q9BR39 696 aaPredicted RBP17.03■□□□□ 0.32
DDX55-201ENST00000238146 LRRC27Q9C0I9 530 aa17.03■□□□□ 0.32
DDX55-201ENST00000238146 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.03■□□□□ 0.32
DDX55-201ENST00000238146 ESYT2A0FGR8 921 aa17.02■□□□□ 0.32
DDX55-201ENST00000238146 RASSF9O75901 435 aa17.02■□□□□ 0.32
DDX55-201ENST00000238146 ZNF844Q08AG5 666 aa17.02■□□□□ 0.32
DDX55-201ENST00000238146 CUL1Q13616 776 aa17.02■□□□□ 0.32
DDX55-201ENST00000238146 RAB34Q9BZG1 259 aa17.02■□□□□ 0.32
DDX55-201ENST00000238146 GOLPH3Q9H4A6 298 aa17.02■□□□□ 0.32
DDX55-201ENST00000238146 SAP30BPQ9UHR5 308 aaKnown RBP17.02■□□□□ 0.32
DDX55-201ENST00000238146 KIF4AO95239 1232 aa17.02■□□□□ 0.31
DDX55-201ENST00000238146 USP11P51784 963 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms