RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 FAM76AQ8TAV0 307 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 TLR10Q9BXR5 811 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 KIAA1024Q9UPX6 916 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.65■□□□□ 0.9
CPSF3-201ENST00000238112 USP17L10C9JJH3 530 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 E9PMD0 336 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 MPHOSPH10O00566 681 aaKnown RBP20.65■□□□□ 0.9
CPSF3-201ENST00000238112 EPHB4P54760 987 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 POLR2FP61218 127 aaKnown RBP20.65■□□□□ 0.9
CPSF3-201ENST00000238112 KLHDC7AQ5VTJ3 777 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 C8orf74Q6P047 294 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 TRIM34Q9BYJ4 488 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 DDX4Q9NQI0 724 aaKnown RBP20.65■□□□□ 0.9
CPSF3-201ENST00000238112 EHD2Q9NZN4 543 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 LCMT1Q9UIC8 334 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 GOLGA6CA6NDK9 693 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 NOL4O94818 638 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 PLA2G4BP0C869 781 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 GOLGA6DP0CG33 693 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 ADRA2BP18089 450 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 EPS15P42566 896 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 CFAP221Q4G0U5 840 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 HERC4Q5GLZ8 1057 aaPredicted RBP20.65■□□□□ 0.9
CPSF3-201ENST00000238112 HAUS3Q68CZ6 603 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 KCTD1Q719H9 257 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 GPBP1Q86WP2 473 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 GOLGA6AQ9NYA3 693 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 TAF1LQ8IZX4 1826 aa20.65■□□□□ 0.9
CPSF3-201ENST00000238112 MRPS25P82663 173 aaKnown RBP20.64■□□□□ 0.89
CPSF3-201ENST00000238112 FOXR1Q6PIV2 292 aa20.64■□□□□ 0.89
CPSF3-201ENST00000238112 FGFBP2Q9BYJ0 223 aa20.64■□□□□ 0.89
CPSF3-201ENST00000238112 ATP6V0A2Q9Y487 856 aa20.64■□□□□ 0.89
CPSF3-201ENST00000238112 MYO3BQ8WXR4 1341 aa20.64■□□□□ 0.89
CPSF3-201ENST00000238112 TRIM59Q8IWR1 403 aa20.64■□□□□ 0.89
CPSF3-201ENST00000238112 RNF14Q9UBS8 474 aa20.64■□□□□ 0.89
CPSF3-201ENST00000238112 TLR2O60603 784 aa20.63■□□□□ 0.89
CPSF3-201ENST00000238112 KRT18P05783 430 aaKnown RBP20.63■□□□□ 0.89
CPSF3-201ENST00000238112 MARSP56192 900 aaKnown RBP20.63■□□□□ 0.89
CPSF3-201ENST00000238112 CACNB1Q02641 598 aaPredicted RBP20.63■□□□□ 0.89
CPSF3-201ENST00000238112 RAPGEF1Q13905 1077 aa20.63■□□□□ 0.89
CPSF3-201ENST00000238112 GLE1Q53GS7 698 aaKnown RBP20.63■□□□□ 0.89
CPSF3-201ENST00000238112 EMBQ6PCB8 327 aa20.63■□□□□ 0.89
CPSF3-201ENST00000238112 TMC4Q7Z404 712 aa20.63■□□□□ 0.89
CPSF3-201ENST00000238112 ZFP91Q96JP5 570 aaPredicted RBP20.63■□□□□ 0.89
CPSF3-201ENST00000238112 GLT8D2Q9H1C3 349 aa20.63■□□□□ 0.89
CPSF3-201ENST00000238112 RBM12Q9NTZ6 932 aaKnown RBP20.63■□□□□ 0.89
CPSF3-201ENST00000238112 USP40Q9NVE5 1235 aa20.63■□□□□ 0.89
CPSF3-201ENST00000238112 SUGT1Q9Y2Z0 365 aa20.63■□□□□ 0.89
CPSF3-201ENST00000238112 FOCADQ5VW36 1801 aa20.63■□□□□ 0.89
CPSF3-201ENST00000238112 POTEB3A0JP26 581 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 POTECB2RU33 542 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 RIMBP2O15034 1052 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 SHMT1P34896 483 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 POTEBQ6S5H4 581 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 UIMC1Q96RL1 719 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.62■□□□□ 0.89
CPSF3-201ENST00000238112 RASSF4Q9H2L5 321 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 RSPH14Q9UHP6 348 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 ATF5Q9Y2D1 282 aaPredicted RBP20.62■□□□□ 0.89
CPSF3-201ENST00000238112 PCDHA2Q9Y5H9 948 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 NPHP3-ACAD11A0A0J9YXS1 232 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 PALMO75781 387 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 HLA-DOAP06340 250 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 GYS1P13807 737 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 C10orf67Q8IYJ2 551 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 TBC1D5Q92609 795 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 RUFY1Q96T51 708 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 ZHX3Q9H4I2 956 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 EMILIN3Q9NT22 766 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 C10orf71Q711Q0 1435 aa20.62■□□□□ 0.89
CPSF3-201ENST00000238112 OPA1O60313 960 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 TNFRSF8P28908 595 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 ARID5AQ03989 594 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 ADAM9Q13443 819 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 NAB2Q15742 525 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 SLC18A3Q16572 532 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 SCFD1Q8WVM8 642 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 MS4A14Q96JA4 679 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 COA1Q9GZY4 146 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 MYH10P35580 1976 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L15C9J2P7 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L13C9JLJ4 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L11C9JVI0 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L18D6R9N7 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L22D6RA61 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L17D6RBQ6 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L19D6RCP7 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 GOLGA8KD6RF30 607 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L20D6RJB6 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 SLC26A4O43511 780 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 RAD21O60216 631 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 PPFIA4O75335 1185 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 CYP11B2P19099 503 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 HOXA10P31260 410 aaPredicted RBP20.61■□□□□ 0.89
CPSF3-201ENST00000238112 KLHL30Q0D2K2 578 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L24Q0WX57 530 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 USP17L6PQ6QN14 398 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 KCTD10Q9H3F6 313 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 KANSL2Q9H9L4 492 aa20.61■□□□□ 0.89
CPSF3-201ENST00000238112 CETN3O15182 167 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms