RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	SPE2	P21182	396 aa		5.83	□□□□□ -1.48
TFB4	YPR056W	DEP1	P31385	405 aa		5.83	□□□□□ -1.48
TFB4	YPR056W	IMP3	P32899	183 aa	Predicted RBP	5.83	□□□□□ -1.48
TFB4	YPR056W	HIS7	P33734	552 aa	Known RBP	5.83	□□□□□ -1.48
TFB4	YPR056W	KAP104	P38217	918 aa	Known RBP	5.83	□□□□□ -1.48
TFB4	YPR056W	MPS3	P47069	682 aa		5.83	□□□□□ -1.48
TFB4	YPR056W	CTS2	Q06350	511 aa		5.83	□□□□□ -1.48
TFB4	YPR056W	RTT109	Q07794	436 aa		5.83	□□□□□ -1.48
TFB4	YPR056W	RDR1	Q08904	546 aa		5.83	□□□□□ -1.48
TFB4	YPR056W	SRN2	Q99176	213 aa		5.83	□□□□□ -1.48
TFB4	YPR056W	RNR1	P21524	888 aa	Known RBP	5.82	□□□□□ -1.48
TFB4	YPR056W	SEC15	P22224	910 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	MGR1	P25573	417 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	MRPL10	P36520	322 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	BUR6	P40096	142 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	ATM1	P40416	690 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	YRB1	P41920	201 aa	Known RBP	5.82	□□□□□ -1.48
TFB4	YPR056W	OCA2	P53949	197 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	YAT1	P80235	687 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	USA1	Q03714	838 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	PDR8	Q06149	701 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	TLG2	Q08144	397 aa		5.82	□□□□□ -1.48
TFB4	YPR056W	DIS3	Q08162	1001 aa	Known RBP	5.82	□□□□□ -1.48
TFB4	YPR056W	PRS5	Q12265	496 aa	Known RBP	5.82	□□□□□ -1.48
TFB4	YPR056W	ERG11	P10614	530 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	DAL2	P25335	343 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	ICL1	P28240	557 aa	Predicted RBP	5.81	□□□□□ -1.48
TFB4	YPR056W	RIM1	P32445	135 aa	Known RBP	5.81	□□□□□ -1.48
TFB4	YPR056W	DSS4	P32601	143 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	5.81	□□□□□ -1.48	not detected
TFB4	YPR056W	RSM22	P36056	628 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	ARA1	P38115	344 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	YHR112C	P38716	378 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	YMR147W	P40218	223 aa	Known RBP	5.81	□□□□□ -1.48
TFB4	YPR056W	TOS3	P43637	560 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	LOH1	P47055	219 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	ASN2	P49090	572 aa	Known RBP	5.81	□□□□□ -1.48
TFB4	YPR056W	DIA3	P52290	468 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	VPS73	P53142	486 aa	Known RBP	5.81	□□□□□ -1.48
TFB4	YPR056W	LIF1	P53150	421 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	CAF130	P53280	1122 aa	Predicted RBP	5.81	□□□□□ -1.48
TFB4	YPR056W	SMX3	P54999	86 aa	Predicted RBP	5.81	□□□□□ -1.48
TFB4	YPR056W	STD1	Q02794	444 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	YDR541C	Q03049	344 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	VAM3	Q12241	283 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	RRD2	Q12461	358 aa		5.81	□□□□□ -1.48
TFB4	YPR056W	MSF1	P08425	469 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	KIN3	P22209	435 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	YCP4	P25349	247 aa	Known RBP	5.8	□□□□□ -1.48
TFB4	YPR056W	ILV6	P25605	309 aa	Known RBP	5.8	□□□□□ -1.48
TFB4	YPR056W	YUR1	P26725	428 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	RFA2	P26754	273 aa	Known RBP	5.8	□□□□□ -1.48
TFB4	YPR056W	GSY2	P27472	705 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	CWP1	P28319	239 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	GSH1	P32477	678 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	HIR2	P32480	875 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	RAD23	P32628	398 aa	Known RBP	5.8	□□□□□ -1.48
TFB4	YPR056W	YBR144C	P34215	104 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	EGD2	P38879	174 aa	Known RBP	5.8	□□□□□ -1.48
TFB4	YPR056W	RFC4	P40339	323 aa	Known RBP	5.8	□□□□□ -1.48
TFB4	YPR056W	UBX6	P47049	396 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	YNL260C	P53846	198 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	YNL146W	P53906	100 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	EFM6	P53970	246 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	ENT5	Q03769	411 aa	Known RBP	5.8	□□□□□ -1.48
TFB4	YPR056W	CTK1	Q03957	528 aa	Known RBP	5.8	□□□□□ -1.48
TFB4	YPR056W	COX20	Q04935	205 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	ATG26	Q06321	1198 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	ATG31	Q12421	196 aa		5.8	□□□□□ -1.48
TFB4	YPR056W	TDH2	P00358	332 aa	Known RBP	5.79	□□□□□ -1.48
TFB4	YPR056W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	5.79	□□□□□ -1.48	not detected
TFB4	YPR056W	SPS4	P09937	338 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	NHP6B	P11633	99 aa	Known RBP	5.79	□□□□□ -1.48
TFB4	YPR056W	PMR1	P13586	950 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	YAK1	P14680	807 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	ART10	P18634	518 aa	Known RBP	5.79	□□□□□ -1.48
TFB4	YPR056W	COQ1	P18900	473 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	KGD1	P20967	1014 aa	Known RBP	5.79	□□□□□ -1.48
TFB4	YPR056W	VPS34	P22543	875 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	ECT1	P33412	323 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	ASC1	P38011	319 aa	Known RBP	5.79	□□□□□ -1.48
TFB4	YPR056W	RTT107	P38850	1070 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	SUR2	P38992	349 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	GLG2	P47011	380 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	RFX1	P48743	811 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	MIG2	P53035	382 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	ROG1	P53118	685 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	IMO32	P53219	342 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	YGR079W	P53249	370 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	SAM50	P53969	484 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	MRPL35	Q06678	367 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	CMS1	Q07897	291 aa	Known RBP	5.79	□□□□□ -1.48
TFB4	YPR056W	SUT2	Q12286	268 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	YKL033W-A	Q86ZR7	236 aa		5.79	□□□□□ -1.48
TFB4	YPR056W	RAD9	P14737	1309 aa		5.78	□□□□□ -1.48
TFB4	YPR056W	PUT2	P07275	575 aa		5.78	□□□□□ -1.48
TFB4	YPR056W	SEC63	P14906	663 aa		5.78	□□□□□ -1.48
TFB4	YPR056W	PDE1	P22434	369 aa		5.78	□□□□□ -1.48
TFB4	YPR056W	YPS1	P32329	569 aa		5.78	□□□□□ -1.48
TFB4	YPR056W	ECM25	P32525	599 aa		5.78	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms