RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	ATM1	P40416	690 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	SAD1	P43589	448 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	IBA57	P47158	497 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	STR3	P53101	465 aa	Known RBP	3.99	□□□□□ -1.77
UBP6	YFR010W	SUN4	P53616	420 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	3.99	□□□□□ -1.77	not detected
UBP6	YFR010W	YMR130W	Q04223	302 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	COX20	Q04935	205 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	YMR226C	Q05016	267 aa	Known RBP	3.99	□□□□□ -1.77
UBP6	YFR010W	RRP45	Q05636	305 aa	Known RBP	3.99	□□□□□ -1.77
UBP6	YFR010W	STP3	Q05937	343 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	PIG1	Q06216	648 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	YPR078C	Q06813	372 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	RLM1	Q12224	676 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	LAS17	Q12446	633 aa		3.99	□□□□□ -1.77
UBP6	YFR010W	RRP12	Q12754	1228 aa	Known RBP	3.99	□□□□□ -1.77
UBP6	YFR010W	TUS1	Q06412	1307 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	RPL27A	P0C2H6	136 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	RPL27B	P0C2H7	136 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	MATALPHA2	P0CY08	210 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	HMLALPHA2	P0CY09	210 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	ABF1	P14164	731 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	KRS1	P15180	591 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	FRS1	P15624	595 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	PDA1	P16387	420 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	MET16	P18408	261 aa	Predicted RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	PPH22	P23595	377 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	RPS5	P26783	225 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	PPA2	P28239	310 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	AGP2	P38090	596 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	IML3	P38265	245 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	MSS4	P38994	779 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	THO1	P40040	218 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	VHS2	P40463	436 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	SEC24	P40482	926 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	YIL001W	P40560	513 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	CDC40	P40968	455 aa	Predicted RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	HIT1	P46973	164 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	LSM1	P47017	172 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	AIM22	P47051	409 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	COS5	P47187	383 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	IMD4	P50094	524 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	YIP5	P53108	310 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	YNL260C	P53846	198 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	VAC7	P53950	1165 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	KIN4	Q01919	800 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	MRS2	Q01926	470 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	FMP30	Q02883	468 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	EKI1	Q03764	534 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	FIN1	Q03898	291 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	MYO5	Q04439	1219 aa	Known RBP	3.98	□□□□□ -1.77
UBP6	YFR010W	YDR222W	Q04925	415 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	THI7	Q05998	598 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	ARO10	Q06408	635 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	COS7	Q07788	383 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	CRT10	Q08226	957 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	RAX1	Q08760	435 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	MED2	Q12124	431 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	PNS1	Q12412	539 aa		3.98	□□□□□ -1.77
UBP6	YFR010W	CAR1	P00812	333 aa	Known RBP	3.97	□□□□□ -1.77
UBP6	YFR010W	GPH1	P06738	902 aa	Known RBP	3.97	□□□□□ -1.77
UBP6	YFR010W	PDE2	P06776	526 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	CDC33	P07260	213 aa	Known RBP	3.97	□□□□□ -1.77
UBP6	YFR010W	WHI2	P12611	486 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	YAP1	P19880	650 aa	Known RBP	3.97	□□□□□ -1.77
UBP6	YFR010W	YUR1	P26725	428 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	MEI4	P29467	408 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	PRE4	P30657	266 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	PDB1	P32473	366 aa	Known RBP	3.97	□□□□□ -1.77
UBP6	YFR010W	ECT1	P33412	323 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	SPO23	P33757	523 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	YHR078W	P38799	552 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	SOP4	P39543	234 aa	Predicted RBP	3.97	□□□□□ -1.77
UBP6	YFR010W	GID8	P40208	455 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	YJL118W	P47022	219 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	VMA10	P48836	114 aa	Known RBP	3.97	□□□□□ -1.77
UBP6	YFR010W	RRN9	P53437	365 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	ADE16	P54113	591 aa	Known RBP	3.97	□□□□□ -1.77
UBP6	YFR010W	REC102	Q02721	264 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	MFM1	Q02783	413 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	STD1	Q02794	444 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	MRP51	Q02950	344 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	DCR2	Q05924	578 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	YDL114W	Q07530	308 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	SIL1	Q08199	421 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	YOL075C	Q08234	1294 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	SGO1	Q08490	590 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	YOR012W	Q12351	137 aa		3.97	□□□□□ -1.77
UBP6	YFR010W	YBR085C-A	O43137	85 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	RAD3	P06839	778 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	DSF1	P0CX08	502 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	YNR073C	P0CX09	502 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	SNF6	P18888	332 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	KAR4	P25583	335 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	GSY2	P27472	705 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	SRB5	P32585	307 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	RAD23	P32628	398 aa	Known RBP	3.96	□□□□□ -1.78
UBP6	YFR010W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3.96	□□□□□ -1.78	not detected
UBP6	YFR010W	LHS1	P36016	881 aa		3.96	□□□□□ -1.78
UBP6	YFR010W	DOA1	P36037	715 aa		3.96	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 119.7 ms