RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CD320Q9NPF0 282 aa17.49■□□□□ 0.39
SYNE2-228ENST00000639659 LMCD1Q9NZU5 365 aa17.49■□□□□ 0.39
SYNE2-228ENST00000639659 BRWD1Q9NSI6 2320 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 LGR5O75473 907 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 GGPS1O95749 300 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 AMHP03971 560 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 SDSP20132 328 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 HOXA13P31271 388 aaPredicted RBP17.48■□□□□ 0.39
SYNE2-228ENST00000639659 RRP1P56182 461 aaKnown RBP17.48■□□□□ 0.39
SYNE2-228ENST00000639659 RBL2Q08999 1139 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 MBTPS1Q14703 1052 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 CCDC178Q5BJE1 867 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 B4GALNT3Q6L9W6 998 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 ENAHQ8N8S7 591 aaPredicted RBP17.48■□□□□ 0.39
SYNE2-228ENST00000639659 JMJD4Q9H9V9 463 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 DIAPH3Q9NSV4 1193 aa17.48■□□□□ 0.39
SYNE2-228ENST00000639659 UPP2O95045 317 aa17.47■□□□□ 0.39
SYNE2-228ENST00000639659 CTSHP09668 335 aa17.47■□□□□ 0.39
SYNE2-228ENST00000639659 IL9P15248 144 aa17.47■□□□□ 0.39
SYNE2-228ENST00000639659 TRIM71Q2Q1W2 868 aaKnown RBP17.47■□□□□ 0.39
SYNE2-228ENST00000639659 DBF4BQ8NFT6 615 aa17.47■□□□□ 0.39
SYNE2-228ENST00000639659 UIMC1Q96RL1 719 aa17.47■□□□□ 0.39
SYNE2-228ENST00000639659 UBAC1Q9BSL1 405 aa17.47■□□□□ 0.39
SYNE2-228ENST00000639659 AMNQ9BXJ7 453 aa17.47■□□□□ 0.39
SYNE2-228ENST00000639659 INSL6Q9Y581 213 aa17.47■□□□□ 0.39
SYNE2-228ENST00000639659 RSPH10B2B2RC85 870 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 HAS3O00219 553 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 RSPH10BP0C881 870 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 HOXD11P31277 338 aaPredicted RBP17.46■□□□□ 0.39
SYNE2-228ENST00000639659 HIC1Q14526 733 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 HSDL1Q3SXM5 330 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 TRAF7Q6Q0C0 670 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 HOMER1Q86YM7 354 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 IL31RAQ8NI17 732 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 EMID1Q96A84 441 aaPredicted RBP17.46■□□□□ 0.39
SYNE2-228ENST00000639659 MLXIPQ9HAP2 919 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 C11orf16Q9NQ32 467 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 MICAL3Q7RTP6 2002 aa17.46■□□□□ 0.39
SYNE2-228ENST00000639659 EMSYQ7Z589 1322 aa17.46■□□□□ 0.38
SYNE2-228ENST00000639659 C17orf102A2RUQ5 167 aa17.45■□□□□ 0.38
SYNE2-228ENST00000639659 H3BQ06 376 aaPredicted RBP17.45■□□□□ 0.38
SYNE2-228ENST00000639659 IMMTQ16891 758 aaKnown RBP17.45■□□□□ 0.38
SYNE2-228ENST00000639659 CELF3Q5SZQ8 465 aaKnown RBP17.45■□□□□ 0.38
SYNE2-228ENST00000639659 IFIT1BQ5T764 474 aaKnown RBP17.45■□□□□ 0.38
SYNE2-228ENST00000639659 PTCRAQ6ISU1 281 aaPredicted RBP17.45■□□□□ 0.38
SYNE2-228ENST00000639659 FCHSD1Q86WN1 690 aa17.45■□□□□ 0.38
SYNE2-228ENST00000639659 GJD3Q8N144 294 aa17.45■□□□□ 0.38
SYNE2-228ENST00000639659 STAG2Q8N3U4 1231 aa17.45■□□□□ 0.38
SYNE2-228ENST00000639659 ATP6V0A1Q93050 837 aa17.45■□□□□ 0.38
SYNE2-228ENST00000639659 YME1L1Q96TA2 773 aa17.45■□□□□ 0.38
SYNE2-228ENST00000639659 PDCD2LQ9BRP1 358 aa17.45■□□□□ 0.38
SYNE2-228ENST00000639659 ZSWIM5Q9P217 1185 aa17.45■□□□□ 0.38
SYNE2-228ENST00000639659 GPR37L1O60883 481 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 CSPG5O95196 566 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 UBA1P22314 1058 aaKnown RBP17.44■□□□□ 0.38
SYNE2-228ENST00000639659 HSD17B4P51659 736 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 PGM5Q15124 567 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 PTPROQ16827 1216 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 LEXMQ3ZCV2 418 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 MYSM1Q5VVJ2 828 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.44■□□□□ 0.38
SYNE2-228ENST00000639659 GPKOWQ92917 476 aaPredicted RBP eCLIP17.44■□□□□ 0.38
SYNE2-228ENST00000639659 MAF1Q9H063 256 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 PCDHA1Q9Y5I3 950 aa17.44■□□□□ 0.38
SYNE2-228ENST00000639659 KLRF2D3W0D1 207 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 PI4K2BG5E9Z4 385 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 NOP56O00567 594 aaKnown RBP17.43■□□□□ 0.38
SYNE2-228ENST00000639659 OPLAHO14841 1288 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 PPP1R11O60927 126 aaPredicted RBP17.43■□□□□ 0.38
SYNE2-228ENST00000639659 PPFIA4O75335 1185 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 RGS20O76081 388 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 CCND2P30279 289 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 HDAC1Q13547 482 aaPredicted RBP17.43■□□□□ 0.38
SYNE2-228ENST00000639659 KCNV1Q6PIU1 500 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 SERINC5Q86VE9 423 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 FAM178BQ8IXR5 827 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 SEPT8Q92599 483 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 KRT23Q9C075 422 aa17.43■□□□□ 0.38
SYNE2-228ENST00000639659 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.42■□□□□ 0.38
SYNE2-228ENST00000639659 TREHO43280 583 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 SMIM10L2AP0DMW4 78 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 SMIM10L2BP0DMW5 78 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 SP2Q02086 613 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 SP4Q02446 784 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 GPM6BQ13491 265 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 CSPP1Q1MSJ5 1256 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 EPC2Q52LR7 807 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 TIGD5Q53EQ6 642 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 PIBF1Q8WXW3 757 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 ANKS1AQ92625 1134 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 MRPL38Q96DV4 380 aaKnown RBP17.42■□□□□ 0.38
SYNE2-228ENST00000639659 CTNNA3Q9UI47 895 aa17.42■□□□□ 0.38
SYNE2-228ENST00000639659 H3BRB1 525 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 GCOM1H8Y6P7 765 aaPredicted RBP17.41■□□□□ 0.38
SYNE2-228ENST00000639659 ZBTB5O15062 677 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 LGALS2P05162 132 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 POLR2MP0CAP2 368 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 PLEKHG4Q58EX7 1191 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 TCEAL5Q5H9L2 206 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 TICAM2Q86XR7 235 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 271.3 ms