RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 BRWD1Q9NSI6 2320 aa22.6■■□□□ 1.21
CLN3-262ENST00000637699 MYH7BA7E2Y1 1941 aa22.6■■□□□ 1.21
CLN3-262ENST00000637699 OPLAHO14841 1288 aa22.59■■□□□ 1.21
CLN3-262ENST00000637699 EFCAB14O75071 495 aa22.59■■□□□ 1.21
CLN3-262ENST00000637699 HSD17B4P51659 736 aa22.59■■□□□ 1.21
CLN3-262ENST00000637699 HIC1Q14526 733 aa22.59■■□□□ 1.21
CLN3-262ENST00000637699 MBTPS1Q14703 1052 aa22.59■■□□□ 1.21
CLN3-262ENST00000637699 STAG2Q8N3U4 1231 aa22.59■■□□□ 1.21
CLN3-262ENST00000637699 KHSRPQ92945 711 aaKnown RBP eCLIP22.59■■□□□ 1.21
CLN3-262ENST00000637699 AMNQ9BXJ7 453 aa22.59■■□□□ 1.21
CLN3-262ENST00000637699 RGS20O76081 388 aa22.58■■□□□ 1.21
CLN3-262ENST00000637699 MYSM1Q5VVJ2 828 aa22.58■■□□□ 1.21
CLN3-262ENST00000637699 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-262ENST00000637699 SPATA33Q96N06 139 aa22.58■■□□□ 1.21
CLN3-262ENST00000637699 PDCD2LQ9BRP1 358 aa22.58■■□□□ 1.21
CLN3-262ENST00000637699 UBAC1Q9BSL1 405 aa22.58■■□□□ 1.21
CLN3-262ENST00000637699 LAMA4Q16363 1823 aa22.57■■□□□ 1.2
CLN3-262ENST00000637699 PPFIA4O75335 1185 aa22.57■■□□□ 1.2
CLN3-262ENST00000637699 LGR5O75473 907 aa22.57■■□□□ 1.2
CLN3-262ENST00000637699 HOXA13P31271 388 aaPredicted RBP22.57■■□□□ 1.2
CLN3-262ENST00000637699 IMMTQ16891 758 aaKnown RBP22.57■■□□□ 1.2
CLN3-262ENST00000637699 HSDL1Q3SXM5 330 aa22.57■■□□□ 1.2
CLN3-262ENST00000637699 TMEM31Q5JXX7 168 aa22.57■■□□□ 1.2
CLN3-262ENST00000637699 CELF3Q5SZQ8 465 aaKnown RBP22.57■■□□□ 1.2
CLN3-262ENST00000637699 PLEKHM2Q8IWE5 1019 aa22.57■■□□□ 1.2
CLN3-262ENST00000637699 ZFP91Q96JP5 570 aaPredicted RBP22.57■■□□□ 1.2
CLN3-262ENST00000637699 KRT23Q9C075 422 aa22.57■■□□□ 1.2
CLN3-262ENST00000637699 KLRF2D3W0D1 207 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 PPP1R11O60927 126 aaPredicted RBP22.56■■□□□ 1.2
CLN3-262ENST00000637699 GGPS1O95749 300 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 THPOP40225 353 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 IFIT1BQ5T764 474 aaKnown RBP22.56■■□□□ 1.2
CLN3-262ENST00000637699 DBF4BQ8NFT6 615 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 C17orf80Q9BSJ5 609 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 DSCC1Q9BVC3 393 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 UBE2ZQ9H832 354 aaPredicted RBP22.56■■□□□ 1.2
CLN3-262ENST00000637699 CD320Q9NPF0 282 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 INSL6Q9Y581 213 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 PCDHA1Q9Y5I3 950 aa22.56■■□□□ 1.2
CLN3-262ENST00000637699 HOXD8P13378 290 aaPredicted RBP22.55■■□□□ 1.2
CLN3-262ENST00000637699 SP2Q02086 613 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 KCNV1Q6PIU1 500 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 STOX1Q6ZVD7 989 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 VSIG10LQ86VR7 867 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 SMC5Q8IY18 1101 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 MYOCDQ8IZQ8 938 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 IL31RAQ8NI17 732 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 CTNNA3Q9UI47 895 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 HCN4Q9Y3Q4 1203 aa22.55■■□□□ 1.2
CLN3-262ENST00000637699 FAM86C2PA6NEL3 165 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 RSPH10B2B2RC85 870 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 ZBTB5O15062 677 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 AMHP03971 560 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 RSPH10BP0C881 870 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 GHRHRQ02643 423 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 PGM5Q15124 567 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 SERINC5Q86VE9 423 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 CHD1LQ86WJ1 897 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 FBXO22Q8NEZ5 403 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 C16orf70Q9BSU1 422 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 OSBPL3Q9H4L5 887 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 CNNM2Q9H8M5 875 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 MLXIPQ9HAP2 919 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 MAP3K20Q9NYL2 800 aaKnown RBP22.54■■□□□ 1.2
CLN3-262ENST00000637699 EMSYQ7Z589 1322 aa22.54■■□□□ 1.2
CLN3-262ENST00000637699 SIP14410 1827 aa22.53■■□□□ 1.2
CLN3-262ENST00000637699 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.53■■□□□ 1.2
CLN3-262ENST00000637699 HIP1O00291 1037 aa22.53■■□□□ 1.2
CLN3-262ENST00000637699 UBA1P22314 1058 aaKnown RBP22.53■■□□□ 1.2
CLN3-262ENST00000637699 KCNA5P22460 613 aa22.53■■□□□ 1.2
CLN3-262ENST00000637699 FCHSD1Q86WN1 690 aa22.53■■□□□ 1.2
CLN3-262ENST00000637699 HOMER1Q86YM7 354 aa22.53■■□□□ 1.2
CLN3-262ENST00000637699 GPKOWQ92917 476 aaPredicted RBP eCLIP22.53■■□□□ 1.2
CLN3-262ENST00000637699 ATP6V0A1Q93050 837 aa22.53■■□□□ 1.2
CLN3-262ENST00000637699 MTMR8Q96EF0 704 aa22.53■■□□□ 1.2
CLN3-262ENST00000637699 RWDD1Q9H446 243 aaPredicted RBP22.53■■□□□ 1.2
CLN3-262ENST00000637699 MAD2L2Q9UI95 211 aa22.53■■□□□ 1.2
CLN3-262ENST00000637699 C17orf102A2RUQ5 167 aa22.52■■□□□ 1.2
CLN3-262ENST00000637699 CCND2P30279 289 aa22.52■■□□□ 1.2
CLN3-262ENST00000637699 C11orf16Q9NQ32 467 aa22.52■■□□□ 1.2
CLN3-262ENST00000637699 H3BRB1 525 aa22.51■■□□□ 1.19
CLN3-262ENST00000637699 TGFB3P10600 412 aa22.51■■□□□ 1.19
CLN3-262ENST00000637699 HTRA4P83105 476 aaPredicted RBP22.51■■□□□ 1.19
CLN3-262ENST00000637699 SEC23AQ15436 765 aa22.51■■□□□ 1.19
CLN3-262ENST00000637699 LEXMQ3ZCV2 418 aa22.51■■□□□ 1.19
CLN3-262ENST00000637699 PLEKHG4Q58EX7 1191 aa22.51■■□□□ 1.19
CLN3-262ENST00000637699 CYB5R4Q7L1T6 521 aa22.51■■□□□ 1.19
CLN3-262ENST00000637699 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.51■■□□□ 1.19
CLN3-262ENST00000637699 TUT1Q9H6E5 874 aaKnown RBP22.51■■□□□ 1.19
CLN3-262ENST00000637699 BCAS3Q9H6U6 928 aa22.51■■□□□ 1.19
CLN3-262ENST00000637699 PALM3A6NDB9 673 aaPredicted RBP22.5■■□□□ 1.19
CLN3-262ENST00000637699 GCOM1H8Y6P7 765 aaPredicted RBP22.5■■□□□ 1.19
CLN3-262ENST00000637699 TREHO43280 583 aa22.5■■□□□ 1.19
CLN3-262ENST00000637699 GPR37L1O60883 481 aa22.5■■□□□ 1.19
CLN3-262ENST00000637699 POLR2MP0CAP2 368 aa22.5■■□□□ 1.19
CLN3-262ENST00000637699 SMIM10L2AP0DMW4 78 aa22.5■■□□□ 1.19
CLN3-262ENST00000637699 SMIM10L2BP0DMW5 78 aa22.5■■□□□ 1.19
CLN3-262ENST00000637699 NUCB1Q02818 461 aa22.5■■□□□ 1.19
CLN3-262ENST00000637699 MKRN4PQ13434 485 aaPredicted RBP22.5■■□□□ 1.19
CLN3-262ENST00000637699 SAMD3Q8N6K7 520 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms