RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 USP17L17D6RBQ6 530 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L19D6RCP7 530 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L20D6RJB6 530 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 SYF2O95926 243 aaKnown RBP16.51■□□□□ 0.23
CLN3-253ENST00000636977 CDK17Q00537 523 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L24Q0WX57 530 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 TMEM119Q4V9L6 283 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 FOXR1Q6PIV2 292 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L6PQ6QN14 398 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 NELFCDQ8IXH7 590 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 EHBP1Q8NDI1 1231 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 RBM17Q96I25 401 aaKnown RBP16.51■□□□□ 0.23
CLN3-253ENST00000636977 CRACR2AQ9BSW2 395 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 GBP3Q9H0R5 595 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 MPHOSPH10O00566 681 aaKnown RBP16.5■□□□□ 0.23
CLN3-253ENST00000636977 HNRNPH3P31942 346 aaKnown RBP16.5■□□□□ 0.23
CLN3-253ENST00000636977 DDR1Q08345 913 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 COASYQ13057 564 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 ASPRV1Q53RT3 343 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 ZFPM1Q8IX07 1006 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 CNPY4Q8N129 248 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 DEF6Q9H4E7 631 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 ZC3H4Q9UPT8 1303 aaKnown RBP16.5■□□□□ 0.23
CLN3-253ENST00000636977 AKR1B10O60218 316 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 RIC8AQ9NPQ8 531 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 HPCAL4Q9UM19 191 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 SNX12Q9UMY4 172 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 PNMA6FA0A0J9YX94 578 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 BUB1O43683 1085 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 SHMT1P34896 483 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 SLC7A5Q01650 507 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 PDIA5Q14554 519 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 DOK7Q18PE1 504 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 PCDHAC2Q9Y5I4 1007 aa16.5■□□□□ 0.23
CLN3-253ENST00000636977 STAT3P40763 770 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 PPP1R2P41236 205 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 SLC1A4P43007 532 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 CLK2P49760 499 aaKnown RBP16.49■□□□□ 0.23
CLN3-253ENST00000636977 RASSF7Q02833 373 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 LRRC1Q9BTT6 524 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 USP40Q9NVE5 1235 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 DMGDHQ9UI17 866 aaKnown RBP16.49■□□□□ 0.23
CLN3-253ENST00000636977 MYH7BA7E2Y1 1941 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 ANO9A1A5B4 782 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 TRAF5O00463 557 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 TTLL1O95922 423 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 TAL1P17542 331 aaPredicted RBP16.49■□□□□ 0.23
CLN3-253ENST00000636977 CACNB3P54284 484 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 SNAP25P60880 206 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 NFIAQ12857 509 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 MTMR8Q96EF0 704 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 FAM204AQ9H8W3 233 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 LCMT1Q9UIC8 334 aa16.49■□□□□ 0.23
CLN3-253ENST00000636977 NHSQ6T4R5 1651 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 MARCH6O60337 910 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 TLR2O60603 784 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 CKAP4Q07065 602 aaKnown RBP16.48■□□□□ 0.23
CLN3-253ENST00000636977 ENOX2Q16206 610 aaKnown RBP16.48■□□□□ 0.23
CLN3-253ENST00000636977 HGSNATQ68CP4 663 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 CCNI2Q6ZMN8 369 aaPredicted RBP16.48■□□□□ 0.23
CLN3-253ENST00000636977 EFCC1Q9HA90 598 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 PANK4Q9NVE7 773 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 PSD3Q9NYI0 1048 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 SERPINB13Q9UIV8 391 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 KIAA1024Q9UPX6 916 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 ADAMTSL1Q8N6G6 1762 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 POTEB3A0JP26 581 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 POTECB2RU33 542 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 RNF40O75150 1001 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 NOL4O94818 638 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 LRRC63Q05C16 580 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 ZCWPW2Q504Y3 356 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 HSP90B2PQ58FF3 399 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 PDXDC1Q6P996 788 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 POTEBQ6S5H4 581 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 MYOCDQ8IZQ8 938 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 MSL3Q8N5Y2 521 aaKnown RBP16.48■□□□□ 0.23
CLN3-253ENST00000636977 SELENOOQ9BVL4 669 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 PLEKHA4Q9H4M7 779 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 PCDHA12Q9UN75 941 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 JRKLQ9Y4A0 524 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 PLIN4Q96Q06 1357 aa16.48■□□□□ 0.23
CLN3-253ENST00000636977 MAGEA1P43355 309 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 DNA2P51530 1060 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 ORC2Q13416 577 aaPredicted RBP16.47■□□□□ 0.23
CLN3-253ENST00000636977 ASTE1Q2TB18 679 aaPredicted RBP16.47■□□□□ 0.23
CLN3-253ENST00000636977 PPP4R3AQ6IN85 833 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 CACNA2D4Q7Z3S7 1137 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 SLF2Q8IX21 1173 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 FNBP4Q8N3X1 1017 aaPredicted RBP16.47■□□□□ 0.23
CLN3-253ENST00000636977 FAM71BQ8TC56 605 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 TBC1D22AQ8WUA7 517 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 MS4A14Q96JA4 679 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 PSTPIP2Q9H939 334 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 POLD4Q9HCU8 107 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 USO1O60763 962 aaKnown RBP16.47■□□□□ 0.23
CLN3-253ENST00000636977 TACC1O75410 805 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 BBOX1O75936 387 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 GGCXP38435 758 aa16.47■□□□□ 0.23
CLN3-253ENST00000636977 PSEN1P49768 467 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms