RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 NR3C2P08235 984 aa22.64■■□□□ 1.21
CLN3-250ENST00000636839 NCAPH2Q6IBW4 605 aa22.64■■□□□ 1.21
CLN3-250ENST00000636839 SNX29Q8TEQ0 813 aa22.64■■□□□ 1.21
CLN3-250ENST00000636839 DNAJC25Q9H1X3 360 aa22.64■■□□□ 1.21
CLN3-250ENST00000636839 EFCC1Q9HA90 598 aa22.64■■□□□ 1.21
CLN3-250ENST00000636839 KCNH7Q9NS40 1196 aa22.64■■□□□ 1.21
CLN3-250ENST00000636839 PNMA3Q9UL41 463 aa22.64■■□□□ 1.21
CLN3-250ENST00000636839 EML1O00423 815 aa22.63■■□□□ 1.21
CLN3-250ENST00000636839 PGK2P07205 417 aa22.63■■□□□ 1.21
CLN3-250ENST00000636839 XRCC6P12956 609 aaKnown RBP eCLIP22.63■■□□□ 1.21
CLN3-250ENST00000636839 WDR78Q5VTH9 848 aa22.63■■□□□ 1.21
CLN3-250ENST00000636839 C11orf57Q6ZUT1 292 aaPredicted RBP22.63■■□□□ 1.21
CLN3-250ENST00000636839 KCNK18Q7Z418 384 aa22.63■■□□□ 1.21
CLN3-250ENST00000636839 VSIG10LQ86VR7 867 aa22.63■■□□□ 1.21
CLN3-250ENST00000636839 NSUN6Q8TEA1 469 aaKnown RBP22.63■■□□□ 1.21
CLN3-250ENST00000636839 SLC5A5Q92911 643 aa22.63■■□□□ 1.21
CLN3-250ENST00000636839 ZNF577Q9BSK1 485 aa22.63■■□□□ 1.21
CLN3-250ENST00000636839 IGF2BP3O00425 579 aaKnown RBP eCLIP22.62■■□□□ 1.21
CLN3-250ENST00000636839 SMC1BQ8NDV3 1235 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 RAB34Q9BZG1 259 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 CCDC39Q9UFE4 941 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 TUBE1Q9UJT0 475 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 LCTP09848 1927 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 CHMP2AO43633 222 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 PSMD10O75832 226 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 LRCH2Q5VUJ6 765 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 KRT79Q5XKE5 535 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 OTOP1Q7RTM1 612 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 ZIC5Q96T25 663 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 JADE2Q9NQC1 790 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 FBXO40Q9UH90 709 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 ABT1Q9ULW3 272 aaKnown RBP22.62■■□□□ 1.21
CLN3-250ENST00000636839 SLC45A1Q9Y2W3 748 aa22.62■■□□□ 1.21
CLN3-250ENST00000636839 TESPA1A2RU30 521 aaPredicted RBP22.61■■□□□ 1.21
CLN3-250ENST00000636839 SOWAHBA6NEL2 793 aa22.61■■□□□ 1.21
CLN3-250ENST00000636839 DDX39AO00148 427 aaKnown RBP22.61■■□□□ 1.21
CLN3-250ENST00000636839 IPO5O00410 1097 aaKnown RBP22.61■■□□□ 1.21
CLN3-250ENST00000636839 ATP9AO75110 1047 aa22.61■■□□□ 1.21
CLN3-250ENST00000636839 RGS20O76081 388 aa22.61■■□□□ 1.21
CLN3-250ENST00000636839 BMP6P22004 513 aa22.61■■□□□ 1.21
CLN3-250ENST00000636839 CUL4BQ13620 913 aa22.61■■□□□ 1.21
CLN3-250ENST00000636839 DHX8Q14562 1220 aaKnown RBP22.61■■□□□ 1.21
CLN3-250ENST00000636839 DPCR1Q3MIW9 517 aa22.61■■□□□ 1.21
CLN3-250ENST00000636839 ELOA2Q8IYF1 753 aaPredicted RBP22.61■■□□□ 1.21
CLN3-250ENST00000636839 TLL2Q9Y6L7 1015 aa22.61■■□□□ 1.21
CLN3-250ENST00000636839 MED24O75448 989 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 SLC25A27O95847 323 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 CCT6AP40227 531 aaKnown RBP22.6■■□□□ 1.21
CLN3-250ENST00000636839 ITGB3BPQ13352 177 aaPredicted RBP22.6■■□□□ 1.21
CLN3-250ENST00000636839 GPRC5AQ8NFJ5 357 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 BLOC1S4Q9NUP1 217 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 FAM155AB1AL88 458 aaPredicted RBP22.6■■□□□ 1.21
CLN3-250ENST00000636839 ECM2O94769 699 aaPredicted RBP22.6■■□□□ 1.21
CLN3-250ENST00000636839 GRM1Q13255 1194 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 MTMR1Q13613 665 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 KANK3Q6NY19 840 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 CALML4Q96GE6 196 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 BCAS3Q9H6U6 928 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 AGO4Q9HCK5 861 aaKnown RBP22.6■■□□□ 1.21
CLN3-250ENST00000636839 USP25Q9UHP3 1055 aa22.6■■□□□ 1.21
CLN3-250ENST00000636839 POTEB3A0JP26 581 aa22.59■■□□□ 1.21
CLN3-250ENST00000636839 GAS7O60861 476 aa22.59■■□□□ 1.21
CLN3-250ENST00000636839 CCND2P30279 289 aa22.59■■□□□ 1.21
CLN3-250ENST00000636839 SARSP49591 514 aaKnown RBP22.59■■□□□ 1.21
CLN3-250ENST00000636839 SETQ01105 290 aaPredicted RBP22.59■■□□□ 1.21
CLN3-250ENST00000636839 DPYDQ12882 1025 aa22.59■■□□□ 1.21
CLN3-250ENST00000636839 POTEBQ6S5H4 581 aa22.59■■□□□ 1.21
CLN3-250ENST00000636839 RGL1Q9NZL6 768 aa22.59■■□□□ 1.21
CLN3-250ENST00000636839 MAN1B1Q9UKM7 699 aa22.59■■□□□ 1.21
CLN3-250ENST00000636839 PFASO15067 1338 aa22.59■■□□□ 1.21
CLN3-250ENST00000636839 POTEB2H3BUK9 544 aa22.58■■□□□ 1.21
CLN3-250ENST00000636839 DHX15O43143 795 aaKnown RBP22.58■■□□□ 1.21
CLN3-250ENST00000636839 SLC10A3P09131 477 aa22.58■■□□□ 1.21
CLN3-250ENST00000636839 CYP4A11Q02928 519 aa22.58■■□□□ 1.21
CLN3-250ENST00000636839 SEMA3FQ13275 785 aa22.58■■□□□ 1.21
CLN3-250ENST00000636839 STX1AQ16623 288 aa22.58■■□□□ 1.21
CLN3-250ENST00000636839 CATSPER3Q86XQ3 398 aa22.58■■□□□ 1.21
CLN3-250ENST00000636839 UNC45AQ9H3U1 944 aa22.58■■□□□ 1.21
CLN3-250ENST00000636839 KIAA1024Q9UPX6 916 aa22.58■■□□□ 1.21
CLN3-250ENST00000636839 SPATA31C1P0DKV0 1188 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 BCRP11274 1271 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 MRE11P49959 708 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 MCM6Q14566 821 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 TMEM119Q4V9L6 283 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 FAM133AQ8N9E0 248 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 FGD4Q96M96 766 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 MMP19Q99542 508 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 KBTBD4Q9NVX7 518 aa22.58■■□□□ 1.2
CLN3-250ENST00000636839 HOOK1Q9UJC3 728 aaKnown RBP22.58■■□□□ 1.2
CLN3-250ENST00000636839 POTEFA5A3E0 1075 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 ALDH5A1P51649 535 aaPredicted RBP22.57■■□□□ 1.2
CLN3-250ENST00000636839 POTEGQ6S5H5 508 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 NIPA1Q7RTP0 329 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 LUZP1Q86V48 1076 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 SPATA20Q8TB22 786 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 SMARCE1Q969G3 411 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 CDK5RAP3Q96JB5 506 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 PYM1Q9BRP8 204 aaKnown RBP22.57■■□□□ 1.2
CLN3-250ENST00000636839 E9PMD0 336 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 NLRP12P59046 1061 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms