RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 RBAK-RBAKDNI3L0D1 243 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 EIF6P56537 245 aaKnown RBP14.14□□□□□ -0.15
LINC00540-203ENST00000631321 CLEC10AQ8IUN9 316 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 SP8Q8IXZ3 490 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 GLIS3Q8NEA6 775 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 COG1Q8WTW3 980 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 NT5C3AQ9H0P0 336 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 HPCAL4Q9UM19 191 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 PCDHA2Q9Y5H9 948 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 COL4A3BPQ9Y5P4 624 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 RPS6KA5O75582 802 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 ACTN2P35609 894 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 MARSP56192 900 aaKnown RBP14.14□□□□□ -0.15
LINC00540-203ENST00000631321 KCNMA1Q12791 1236 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 ZSCAN26Q16670 478 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 FAM26FQ5R3K3 315 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 HGSNATQ68CP4 663 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 TTBK2Q6IQ55 1244 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 ZC3H3Q8IXZ2 948 aaKnown RBP14.14□□□□□ -0.15
LINC00540-203ENST00000631321 SMCR8Q8TEV9 937 aaPredicted RBP14.14□□□□□ -0.15
LINC00540-203ENST00000631321 CCDC102AQ96A19 550 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 GLT8D2Q9H1C3 349 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 NUCKS1Q9H1E3 243 aaKnown RBP14.14□□□□□ -0.15
LINC00540-203ENST00000631321 DEF6Q9H4E7 631 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 MLXIPQ9HAP2 919 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 QSER1Q2KHR3 1735 aa14.14□□□□□ -0.15
LINC00540-203ENST00000631321 TULP2O00295 520 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 AKR1B10O60218 316 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 TCP1P17987 556 aaKnown RBP14.13□□□□□ -0.15
LINC00540-203ENST00000631321 LRRC41Q15345 812 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 CERS5Q8N5B7 392 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 MBOAT7Q96N66 472 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 ALS2CR12Q96Q35 445 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 PSTPIP2Q9H939 334 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 PANK4Q9NVE7 773 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 CEP72Q9P209 647 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 MOCS3O95396 460 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 GNA14O95837 355 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 SYF2O95926 243 aaKnown RBP14.13□□□□□ -0.15
LINC00540-203ENST00000631321 MAGEA1P43355 309 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 DDR1Q08345 913 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 RNF10Q8N5U6 811 aaKnown RBP14.13□□□□□ -0.15
LINC00540-203ENST00000631321 CCDC155Q8N6L0 562 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 BMP2KQ9NSY1 1161 aaPredicted RBP14.13□□□□□ -0.15
LINC00540-203ENST00000631321 RNF216Q9NWF9 866 aaPredicted RBP14.13□□□□□ -0.15
LINC00540-203ENST00000631321 PCDHA12Q9UN75 941 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 HYOU1Q9Y4L1 999 aa14.13□□□□□ -0.15
LINC00540-203ENST00000631321 CYP3A7-CYP3A51PA0A087WV96 503 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 USP17L10C9JJH3 530 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 POLRMTO00411 1230 aaKnown RBP14.12□□□□□ -0.15
LINC00540-203ENST00000631321 NOL4O94818 638 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 CYP3A7P24462 503 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 C2orf54Q08AI8 447 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 OSBPL9Q96SU4 736 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 EHD4Q9H223 541 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 KCNMB3Q9NPA1 279 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 USP40Q9NVE5 1235 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 GREB1LQ9C091 1923 aaPredicted RBP14.12□□□□□ -0.15
LINC00540-203ENST00000631321 UBR3Q6ZT12 1888 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 FRMD3A2A2Y4 597 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 PPEF1O14829 653 aaPredicted RBP14.12□□□□□ -0.15
LINC00540-203ENST00000631321 PRPF6O94906 941 aaKnown RBP14.12□□□□□ -0.15
LINC00540-203ENST00000631321 USP11P51784 963 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 CCDC70Q6NSX1 233 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 TRIM59Q8IWR1 403 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 AENQ8WTP8 325 aaKnown RBP14.12□□□□□ -0.15
LINC00540-203ENST00000631321 ATP6V0A2Q9Y487 856 aa14.12□□□□□ -0.15
LINC00540-203ENST00000631321 TRAF5O00463 557 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 MYBL2P10244 700 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 TNNT3P45378 269 aaPredicted RBP14.11□□□□□ -0.15
LINC00540-203ENST00000631321 MOXD1Q6UVY6 613 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 HHIPL2Q6UWX4 724 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 CACNA2D4Q7Z3S7 1137 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 CCDC65Q8IXS2 484 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 SPATA4Q8NEY3 305 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 CCDC17Q96LX7 622 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 SALL4Q9UJQ4 1053 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 RNF40O75150 1001 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 SERPING1P05155 500 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 PLA2G4BP0C869 781 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 SLC16A2P36021 539 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 CDC42EP5Q6NZY7 148 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 SELENOOQ9BVL4 669 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 FGFBP2Q9BYJ0 223 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 KCTD10Q9H3F6 313 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 CWC15Q9P013 229 aaKnown RBP14.11□□□□□ -0.15
LINC00540-203ENST00000631321 TSKSQ9UJT2 592 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 FAM184BQ9ULE4 1060 aa14.11□□□□□ -0.15
LINC00540-203ENST00000631321 MARCH6O60337 910 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 ONECUT3O60422 494 aaPredicted RBP14.1□□□□□ -0.15
LINC00540-203ENST00000631321 TLR2O60603 784 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 HLA-DOAP06340 250 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 ATP2B2Q01814 1243 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 CCDC40Q4G0X9 1142 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 FAM83BQ5T0W9 1011 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 GJA10Q969M2 543 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 MKL1Q969V6 931 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 NOX5Q96PH1 765 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 TANGO6Q9C0B7 1094 aa14.1□□□□□ -0.15
LINC00540-203ENST00000631321 PITPNM2Q9BZ72 1349 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms