RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ITGA7Q13683 1181 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 HABP4Q5JVS0 413 aaKnown RBP6.55□□□□□ -1.36
CPNE3-208ENST00000614678 MYSM1Q5VVJ2 828 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 SYNE3Q6ZMZ3 975 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 SPRED2Q7Z698 418 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 FAM161BQ96MY7 647 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 MAP3K14Q99558 947 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 GDF15Q99988 308 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 SH2D3AQ9BRG2 576 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 VTA1Q9NP79 307 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 CSF2RAP15509 400 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 MARK3P27448 753 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 CDK7P50613 346 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 FXR1P51114 621 aaKnown RBP eCLIP6.55□□□□□ -1.36
CPNE3-208ENST00000614678 ITGB3BPQ13352 177 aaPredicted RBP6.55□□□□□ -1.36
CPNE3-208ENST00000614678 FAM47CQ5HY64 1035 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 IQSEC1Q6DN90 963 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 FAM126BQ8IXS8 530 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 RGS22Q8NE09 1264 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 HTATIP2Q9BUP3 242 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 CLK2P49760 499 aaKnown RBP6.55□□□□□ -1.36
CPNE3-208ENST00000614678 GHRHRQ02643 423 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 NR5A1Q13285 461 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 SNX17Q15036 470 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 SHHQ15465 462 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 MCF2L2Q86YR7 1114 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 MSL3Q8N5Y2 521 aaKnown RBP6.55□□□□□ -1.36
CPNE3-208ENST00000614678 SCFD2Q8WU76 684 aa6.55□□□□□ -1.36
CPNE3-208ENST00000614678 EIF3JO75822 258 aaKnown RBP6.54□□□□□ -1.36
CPNE3-208ENST00000614678 GDF6Q6KF10 455 aaPredicted RBP6.54□□□□□ -1.36
CPNE3-208ENST00000614678 CCDC83Q8IWF9 413 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 SPATA33Q96N06 139 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 ANO3Q9BYT9 981 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 WNT8AQ9H1J5 351 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 RNPEPQ9H4A4 650 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 CXXC1Q9P0U4 656 aaPredicted RBP6.54□□□□□ -1.36
CPNE3-208ENST00000614678 TMEM150BA6NC51 233 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 A6NJR5 290 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 HMGB1P09429 215 aaKnown RBP6.54□□□□□ -1.36
CPNE3-208ENST00000614678 CALM1P0DP23 149 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 CALM2P0DP24 149 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 CALM3P0DP25 149 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 PSMA5P28066 241 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 GPNMBQ14956 572 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 UTP14CQ5TAP6 766 aaKnown RBP6.54□□□□□ -1.36
CPNE3-208ENST00000614678 TRAPPC12Q8WVT3 735 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 GLT1D1Q96MS3 346 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 INPP4AQ96PE3 977 aaPredicted RBP6.54□□□□□ -1.36
CPNE3-208ENST00000614678 C16orf70Q9BSU1 422 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 MTA3Q9BTC8 594 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 C22orf23Q9BZE7 217 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 AP5M1Q9H0R1 490 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 HDAC6Q9UBN7 1215 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 A0A087WWV3 80 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 PRPF3O43395 683 aaKnown RBP6.54□□□□□ -1.36
CPNE3-208ENST00000614678 KCNA2P16389 499 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 IFNAR1P17181 557 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 TTLL4Q14679 1199 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 DHX38Q92620 1227 aaKnown RBP6.54□□□□□ -1.36
CPNE3-208ENST00000614678 TM6SF1Q9BZW5 370 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 WDFY4Q6ZS81 3184 aa6.54□□□□□ -1.36
CPNE3-208ENST00000614678 FRMPD4Q14CM0 1322 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 ARVCFO00192 962 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 TDP2O95551 362 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 CCNE2O96020 404 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 CST5P28325 142 aaPredicted RBP6.53□□□□□ -1.36
CPNE3-208ENST00000614678 CELF3Q5SZQ8 465 aaKnown RBP6.53□□□□□ -1.36
CPNE3-208ENST00000614678 DHX37Q8IY37 1157 aaKnown RBP6.53□□□□□ -1.36
CPNE3-208ENST00000614678 FBXL16Q8N461 479 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 PCYT2Q99447 389 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 RIC8AQ9NPQ8 531 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 KCNH7Q9NS40 1196 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 TMEM39AQ9NV64 488 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 RBM28Q9NW13 759 aaKnown RBP6.53□□□□□ -1.36
CPNE3-208ENST00000614678 MYO7AQ13402 2215 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 PIK3CDO00329 1044 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 CD4P01730 458 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 ADCY7P51828 1080 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 NBR1Q14596 966 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 KIAA0753Q2KHM9 967 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 DEFB128Q7Z7B8 93 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 ALDH8A1Q9H2A2 487 aaPredicted RBP6.53□□□□□ -1.36
CPNE3-208ENST00000614678 SLKQ9H2G2 1235 aaPredicted RBP6.53□□□□□ -1.36
CPNE3-208ENST00000614678 SPATA31C2B4DYI2 1134 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 CLTBP09497 229 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 MYOGP15173 224 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 CCND2P30279 289 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 GNAQP50148 359 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 NSUN7Q8NE18 718 aaKnown RBP6.53□□□□□ -1.36
CPNE3-208ENST00000614678 CRYGNQ8WXF5 182 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 CUL5Q93034 780 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 LENG9Q96B70 501 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 ZNF668Q96K58 619 aaPredicted RBP6.53□□□□□ -1.36
CPNE3-208ENST00000614678 ZMYND12Q9H0C1 365 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 FOXD4L1Q9NU39 408 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 NRBP1Q9UHY1 535 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 TBX21Q9UL17 535 aa6.53□□□□□ -1.36
CPNE3-208ENST00000614678 IGLV3-22A0A075B6J6 115 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 GSTTP1A0A1W2PQM5 241 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 M0R2N6 131 aa6.52□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms