RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 KBTBD13C9JR72 458 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 RGS16O15492 202 aaPredicted RBP22.2■■□□□ 1.14
UPF1-207ENST00000599848 STX2P32856 288 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 RAD51Q06609 339 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 GSDMAQ96QA5 445 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 UIMC1Q96RL1 719 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 NCAPD2Q15021 1401 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 HSPA6P17066 643 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 KCTD1Q719H9 257 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 WRNIP1Q96S55 665 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 DDX50Q9BQ39 737 aaKnown RBP22.2■■□□□ 1.14
UPF1-207ENST00000599848 PARVGQ9HBI0 331 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 PTCH1Q13635 1447 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 ADGRL3Q9HAR2 1447 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 K7ERI5 159 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 TTI1O43156 1089 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 AFPP02771 609 aaKnown RBP22.19■■□□□ 1.14
UPF1-207ENST00000599848 KRT76Q01546 638 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 DRP2Q13474 957 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 N4BP2L2Q92802 583 aaPredicted RBP22.19■■□□□ 1.14
UPF1-207ENST00000599848 RSRC1Q96IZ7 334 aaKnown RBP22.19■■□□□ 1.14
UPF1-207ENST00000599848 ZNF212Q9UDV6 495 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 USP17L10C9JJH3 530 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 FCER1AP12319 257 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 WHAMMP3Q1A5X7 153 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 DNAJC24Q6P3W2 148 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 MKRN3Q13064 507 aaKnown RBP22.19■■□□□ 1.14
UPF1-207ENST00000599848 PPP4R3CPQ6ZMV5 832 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 BEST2Q8NFU1 509 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 HPCAL4Q9UM19 191 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 ARAP3Q8WWN8 1544 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 TTC36A6NLP5 189 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 KRIT1O00522 736 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 LRRC31Q6UY01 552 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 SYNE4Q8N205 404 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 SLC13A4Q9UKG4 626 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 SPATA31A3Q5VYP0 1347 aa22.19■■□□□ 1.14
UPF1-207ENST00000599848 HAUS4Q9H6D7 363 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 POLIQ9UNA4 740 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 PFKFB1P16118 471 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 CRKP46108 304 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 PDE1BQ01064 536 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 ADCY9O60503 1353 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 KIF3CO14782 793 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 ADD2P35612 726 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 DGKHQ86XP1 1220 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 ARHGEF2Q92974 986 aaKnown RBP22.18■■□□□ 1.14
UPF1-207ENST00000599848 NUDCD1Q96RS6 583 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 SUGT1Q9Y2Z0 365 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 ZNF335Q9H4Z2 1342 aaPredicted RBP22.18■■□□□ 1.14
UPF1-207ENST00000599848 PTGDRQ13258 359 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 DBN1Q16643 649 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 SPATA1Q5VX52 437 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 PPP1R18Q6NYC8 613 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 MMTAG2Q9BU76 263 aaKnown RBP22.18■■□□□ 1.14
UPF1-207ENST00000599848 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.18■■□□□ 1.14
UPF1-207ENST00000599848 MAD1L1Q9Y6D9 718 aa22.18■■□□□ 1.14
UPF1-207ENST00000599848 ZNF18P17022 549 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 NR2F2P24468 414 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 SFNP31947 248 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 POLR2FP61218 127 aaKnown RBP22.17■■□□□ 1.14
UPF1-207ENST00000599848 KRT71Q3SY84 523 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 ATP6V0A4Q9HBG4 840 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 STRIP2Q9ULQ0 834 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 SAR1BQ9Y6B6 198 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 TNPO2O14787 897 aaKnown RBP22.17■■□□□ 1.14
UPF1-207ENST00000599848 PRPSAP2O60256 369 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 TTC23LQ6PF05 361 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 TADA2BQ86TJ2 420 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.17■■□□□ 1.14
UPF1-207ENST00000599848 ZHX2Q9Y6X8 837 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 TMEM247A6NEH6 219 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 EIF3DO15371 548 aaKnown RBP eCLIP22.17■■□□□ 1.14
UPF1-207ENST00000599848 EEF1GP26641 437 aaKnown RBP22.17■■□□□ 1.14
UPF1-207ENST00000599848 ZNF75DP51815 510 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 ARHGEF18Q6ZSZ5 1173 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 MAP3K20Q9NYL2 800 aaKnown RBP22.17■■□□□ 1.14
UPF1-207ENST00000599848 TTC4O95801 387 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 NXNQ6DKJ4 435 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 TRPV6Q9H1D0 765 aa22.17■■□□□ 1.14
UPF1-207ENST00000599848 KRBA2Q6ZNG9 492 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 RBM46Q8TBY0 533 aaKnown RBP22.16■■□□□ 1.14
UPF1-207ENST00000599848 FAM49AQ9H0Q0 323 aaPredicted RBP22.16■■□□□ 1.14
UPF1-207ENST00000599848 SH3GLB2Q9NR46 395 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 PALD1Q9ULE6 856 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 CCNYQ8ND76 341 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 ACAP3Q96P50 834 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 MMP19Q99542 508 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 SPZ1Q9BXG8 430 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 ZFYVE28Q9HCC9 887 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 USP6P35125 1406 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 HUS1O60921 280 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 BRIP1Q9BX63 1249 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 EHD2Q9NZN4 543 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 KIAA1468Q9P260 1216 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 ECE2O60344 883 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 CYP2E1P05181 493 aaPredicted RBP22.16■■□□□ 1.14
UPF1-207ENST00000599848 SKAP1Q86WV1 359 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 MSTO1Q9BUK6 570 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 FKBP3Q00688 224 aaKnown RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms