RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 HIPK3Q9H422 1215 aa14□□□□□ -0.17
LIG1-217ENST00000599165 RBM28Q9NW13 759 aaKnown RBP14□□□□□ -0.17
LIG1-217ENST00000599165 RTEL1Q9NZ71 1219 aa14□□□□□ -0.17
LIG1-217ENST00000599165 COL6A3P12111 3177 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 SPATA31C2B4DYI2 1134 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 STXBP3O00186 592 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 EPB41L2O43491 1005 aaKnown RBP13.99□□□□□ -0.17
LIG1-217ENST00000599165 GGPS1O95749 300 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 F2P00734 622 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 ZNF286BP0CG31 522 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 ACRP10323 421 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 EVCP57679 992 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 LAMC2Q13753 1193 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 BLOC1S2Q6QNY1 142 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 HEATR3Q7Z4Q2 680 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 SESTD1Q86VW0 696 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 DHX37Q8IY37 1157 aaKnown RBP13.99□□□□□ -0.17
LIG1-217ENST00000599165 SMARCC2Q8TAQ2 1214 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 C16orf70Q9BSU1 422 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 PSTPIP2Q9H939 334 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 V9GY48 417 aaPredicted RBP13.99□□□□□ -0.17
LIG1-217ENST00000599165 PTPRSQ13332 1948 aa13.99□□□□□ -0.17
LIG1-217ENST00000599165 TGFB3P10600 412 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 ITGB5P18084 799 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 CASTP20810 708 aaKnown RBP13.98□□□□□ -0.17
LIG1-217ENST00000599165 CCL23P55773 120 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 PTPN11Q06124 597 aaPredicted RBP13.98□□□□□ -0.17
LIG1-217ENST00000599165 TOB2Q14106 344 aaPredicted RBP13.98□□□□□ -0.17
LIG1-217ENST00000599165 NTRK3Q16288 839 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 PKN1Q16512 942 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 DGKDQ16760 1214 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 BRDTQ58F21 947 aaPredicted RBP13.98□□□□□ -0.17
LIG1-217ENST00000599165 GDF6Q6KF10 455 aaPredicted RBP13.98□□□□□ -0.17
LIG1-217ENST00000599165 KCNV1Q6PIU1 500 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 SYNE3Q6ZMZ3 975 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 DHX38Q92620 1227 aaKnown RBP13.98□□□□□ -0.17
LIG1-217ENST00000599165 SCLYQ96I15 445 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 RNPC3Q96LT9 517 aaKnown RBP13.98□□□□□ -0.17
LIG1-217ENST00000599165 ZSWIM6Q9HCJ5 1215 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 MTMR10Q9NXD2 777 aa13.98□□□□□ -0.17
LIG1-217ENST00000599165 ATP9AO75110 1047 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 STAM2O75886 525 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 PSEN2P49810 448 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 PPIGQ13427 754 aaKnown RBP eCLIP13.97□□□□□ -0.173e-7■■□□□ 14.1
LIG1-217ENST00000599165 GPNMBQ14956 572 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 FAM47CQ5HY64 1035 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 ZNF365Q70YC5 407 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 TMEM199Q8N511 208 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 DEFB123Q8N688 67 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 WNT8BQ93098 351 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 SPATA33Q96N06 139 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 TTYH1Q9H313 450 aaPredicted RBP13.97□□□□□ -0.17
LIG1-217ENST00000599165 IL23AQ9NPF7 189 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 CXXC1Q9P0U4 656 aaPredicted RBP13.97□□□□□ -0.17
LIG1-217ENST00000599165 PCDHA6Q9UN73 950 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 PCDHA8Q9Y5H6 950 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 UBIAD1Q9Y5Z9 338 aa13.97□□□□□ -0.17
LIG1-217ENST00000599165 FIBPO43427 364 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 PPFIA4O75335 1185 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 KCNA2P16389 499 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 PDIA3P30101 505 aaKnown RBP13.96□□□□□ -0.17
LIG1-217ENST00000599165 CLK2P49760 499 aaKnown RBP13.96□□□□□ -0.17
LIG1-217ENST00000599165 METAP2P50579 478 aaKnown RBP eCLIP13.96□□□□□ -0.17
LIG1-217ENST00000599165 SMAD3P84022 425 aaKnown RBP13.96□□□□□ -0.17
LIG1-217ENST00000599165 MFSD10Q14728 455 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 PFKFB3Q16875 520 aaPredicted RBP13.96□□□□□ -0.17
LIG1-217ENST00000599165 PPP1R18Q6NYC8 613 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 XRRA1Q6P2D8 792 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 METTL7BQ6UX53 244 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 RUFY3Q7L099 469 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 CUL5Q93034 780 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 PGBD1Q96JS3 809 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 GUCD1Q96NT3 240 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 RIC8AQ9NPQ8 531 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 TMEM260Q9NX78 707 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 BARHL2Q9NY43 387 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 HDAC6Q9UBN7 1215 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 GTF2IRD1Q9UHL9 959 aa13.96□□□□□ -0.17
LIG1-217ENST00000599165 MYO9BQ13459 2157 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 GRXCR1A8MXD5 290 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 PPFIA3O75145 1194 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 SUPT20HL2P0C7V6 817 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 HOXC8P31273 242 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 NAPAP54920 295 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 CHMP4BP1P59074 171 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 ZNF200P98182 395 aaPredicted RBP13.95□□□□□ -0.18
LIG1-217ENST00000599165 PTGISQ16647 500 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 KIAA0753Q2KHM9 967 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 TRIM71Q2Q1W2 868 aaKnown RBP13.95□□□□□ -0.18
LIG1-217ENST00000599165 GNPTABQ3T906 1256 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 TRAF7Q6Q0C0 670 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 CYFIP1Q7L576 1253 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 CYP2W1Q8TAV3 490 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 HERVK_113Q902F9 699 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 GPR20Q99678 358 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 ALG1Q9BT22 464 aa13.95□□□□□ -0.18
LIG1-217ENST00000599165 UPF3BQ9BZI7 483 aaKnown RBP13.95□□□□□ -0.18
LIG1-217ENST00000599165 NCOA5Q9HCD5 579 aaKnown RBP13.95□□□□□ -0.18
LIG1-217ENST00000599165 PITPNM1O00562 1244 aa13.94□□□□□ -0.18
LIG1-217ENST00000599165 LGALS2P05162 132 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms