RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ARP10275 920 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 UBA1P22314 1058 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 MYSM1Q5VVJ2 828 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 CXCL17Q6UXB2 119 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 AFG1LQ8WV93 481 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 MXRA8Q9BRK3 442 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 TSEN34Q9BSV6 310 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 JADE2Q9NQC1 790 aa16.24■□□□□ 0.19
SHKBP1-217ENST00000598558 GRIN2DO15399 1336 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 FAM205CA6NFA0 338 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 A6NJR5 290 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 MEIS1O00470 390 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 STAM2O75886 525 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 GGPS1O95749 300 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 GH1P01241 217 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 CYP3A4P08684 503 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 GUCY1B3Q02153 619 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 CELF3Q5SZQ8 465 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 SLC39A5Q6ZMH5 540 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 BICD2Q8TD16 824 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 PPP1R13LQ8WUF5 828 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 UIMC1Q96RL1 719 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 SPC25Q9HBM1 224 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 FRMPD3Q5JV73 1810 aa16.23■□□□□ 0.19
SHKBP1-217ENST00000598558 IGLV3-22A0A075B6J6 115 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 FIBPO43427 364 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 TGFB3P10600 412 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 KCNA2P16389 499 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 NR5A1Q13285 461 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 HSDL1Q3SXM5 330 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 KRT40Q6A162 431 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 DHX37Q8IY37 1157 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 FAM177A1Q8N128 213 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 TBCKQ8TEA7 893 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 WASF1Q92558 559 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 TNFRSF25Q93038 417 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 GPRASP2Q96D09 838 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 PKD2L1Q9P0L9 805 aa16.22■□□□□ 0.19
SHKBP1-217ENST00000598558 MOXD2PA6NHM9 499 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 BTBD18B2RXH4 712 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 MMP3P08254 477 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 MCM2P49736 904 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 PSMC6P62333 389 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 PURAQ00577 322 aaKnown RBP16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 GNPTABQ3T906 1256 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 CEP55Q53EZ4 464 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 GALNT17Q6IS24 598 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 KCNV1Q6PIU1 500 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 CYFIP1Q7L576 1253 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 NLRX1Q86UT6 975 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 PCSK9Q8NBP7 692 aaKnown RBP16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 IL27Q8NEV9 243 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 EMID1Q96A84 441 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 LENG9Q96B70 501 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 EHMT1Q9H9B1 1298 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 KCNH7Q9NS40 1196 aa16.21■□□□□ 0.19
SHKBP1-217ENST00000598558 MMP1P03956 469 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 MYL3P08590 195 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 CIITAP33076 1130 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 ITGB3BPQ13352 177 aaPredicted RBP16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 MTMR1Q13613 665 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 CUL4AQ13619 759 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 LAMC2Q13753 1193 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 SNX17Q15036 470 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 MCTP2Q6DN12 878 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 KAT2BQ92831 832 aa16.2■□□□□ 0.18
SHKBP1-217ENST00000598558 WNT7AO00755 349 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 HOXD8P13378 290 aaPredicted RBP16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 CDK7P50613 346 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 RTP1P59025 263 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 HMGN5P82970 282 aaKnown RBP16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 INF2Q27J81 1249 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 TRIM60Q495X7 471 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 PLA2G4DQ86XP0 818 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 SLC43A3Q8NBI5 491 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 DPF3Q92784 378 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 SPATA33Q96N06 139 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 SENP7Q9BQF6 1050 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 HTATIP2Q9BUP3 242 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 AGO4Q9HCK5 861 aaKnown RBP16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 STARD7Q9NQZ5 370 aa16.19■□□□□ 0.18
SHKBP1-217ENST00000598558 TNRC18O15417 2968 aaPredicted RBP16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 DHX15O43143 795 aaKnown RBP16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 TDP2O95551 362 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 XBP1P17861 261 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 KRT2P35908 639 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 ZNF76P36508 570 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 CPT1AP50416 773 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 USP11P51784 963 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 NEDD9Q14511 834 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 METTL7BQ6UX53 244 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 PIK3AP1Q6ZUJ8 805 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 NIPA1Q7RTP0 329 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 KRT25Q7Z3Z0 450 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 DIS3L2Q8IYB7 885 aaKnown RBP16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 FBXO18Q8NFZ0 1043 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 PPTC7Q8NI37 304 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 GJA10Q969M2 543 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 C8orf76Q96K31 380 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 GLT1D1Q96MS3 346 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms