RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 NDUFA8P51970 172 aa16.54■□□□□ 0.24
VRK3-212ENST00000596814 PDE4DQ08499 809 aa16.54■□□□□ 0.24
VRK3-212ENST00000596814 PWP2Q15269 919 aaKnown RBP16.54■□□□□ 0.24
VRK3-212ENST00000596814 IGSF22Q8N9C0 903 aa16.54■□□□□ 0.24
VRK3-212ENST00000596814 GPRASP2Q96D09 838 aa16.54■□□□□ 0.24
VRK3-212ENST00000596814 INPP4AQ96PE3 977 aaPredicted RBP16.54■□□□□ 0.24
VRK3-212ENST00000596814 ZNF577Q9BSK1 485 aa16.54■□□□□ 0.24
VRK3-212ENST00000596814 KCNH7Q9NS40 1196 aa16.54■□□□□ 0.24
VRK3-212ENST00000596814 PCDHA12Q9UN75 941 aa16.54■□□□□ 0.24
VRK3-212ENST00000596814 HPSEQ9Y251 543 aa16.54■□□□□ 0.24
VRK3-212ENST00000596814 DOCK3Q8IZD9 2030 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 COBLO75128 1261 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 NR1I2O75469 434 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 ECM2O94769 699 aaPredicted RBP16.53■□□□□ 0.24
VRK3-212ENST00000596814 TXLNAP40222 546 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 ZNF792Q3KQV3 632 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 GNPTABQ3T906 1256 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 LRCH2Q5VUJ6 765 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 CAVIN1Q6NZI2 390 aaKnown RBP16.53■□□□□ 0.24
VRK3-212ENST00000596814 USP49Q70CQ1 688 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 SLC5A5Q92911 643 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 EPSTI1Q96J88 318 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 CFHR5Q9BXR6 569 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 DACT1Q9NYF0 836 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 POTEMA6NI47 508 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 IPO5O00410 1097 aaKnown RBP16.53■□□□□ 0.24
VRK3-212ENST00000596814 EIF3JO75822 258 aaKnown RBP16.53■□□□□ 0.24
VRK3-212ENST00000596814 SYKP43405 635 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 DPP9Q86TI2 863 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 FMR1NBQ8N0W7 255 aaPredicted RBP16.53■□□□□ 0.24
VRK3-212ENST00000596814 ENGASEQ8NFI3 743 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 SYAP1Q96A49 352 aaPredicted RBP16.53■□□□□ 0.24
VRK3-212ENST00000596814 AGO4Q9HCK5 861 aaKnown RBP16.53■□□□□ 0.24
VRK3-212ENST00000596814 DDX19AQ9NUU7 478 aaKnown RBP16.53■□□□□ 0.24
VRK3-212ENST00000596814 KCNH3Q9ULD8 1083 aa16.53■□□□□ 0.24
VRK3-212ENST00000596814 ASB14A6NK59 587 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 PP2D1A8MPX8 630 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 GAS7O60861 476 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 KINO60870 393 aaKnown RBP16.52■□□□□ 0.24
VRK3-212ENST00000596814 TBC1D8O95759 1140 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 SNW1Q13573 536 aaKnown RBP16.52■□□□□ 0.24
VRK3-212ENST00000596814 PDIA5Q14554 519 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 MORN1Q5T089 497 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 MORC4Q8TE76 937 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 CDHR1Q96JP9 859 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 SLC5A4Q9NY91 659 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 LRWD1Q9UFC0 647 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 VAV3Q9UKW4 847 aa16.52■□□□□ 0.24
VRK3-212ENST00000596814 DIS3Q9Y2L1 958 aaKnown RBP16.52■□□□□ 0.24
VRK3-212ENST00000596814 ZSWIM8A7E2V4 1837 aa16.52■□□□□ 0.23
VRK3-212ENST00000596814 TNPO2O14787 897 aaKnown RBP16.51■□□□□ 0.23
VRK3-212ENST00000596814 MAFGO15525 162 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 PSMD10O75832 226 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 RGS20O76081 388 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 HSPA6P17066 643 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 CDC25AP30304 524 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 UBA7P41226 1012 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 ZNF467Q7Z7K2 595 aaPredicted RBP16.51■□□□□ 0.23
VRK3-212ENST00000596814 SOCS4Q8WXH5 440 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 RIT2Q99578 217 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 TEKT3Q9BXF9 490 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 RNF186Q9NXI6 227 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 PKD2L1Q9P0L9 805 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 TMEM63CQ9P1W3 806 aa16.51■□□□□ 0.23
VRK3-212ENST00000596814 TRPA1O75762 1119 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 FCGRTP55899 365 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 SPIRE1Q08AE8 756 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 MAP2K5Q13163 448 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 SEMA3FQ13275 785 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 CCDC183Q5T5S1 534 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 ARMCX2Q7L311 632 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 CABP7Q86V35 215 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 NUDT12Q9BQG2 462 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 CCSER1Q9C0I3 900 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 POLR2DO15514 142 aaKnown RBP16.5■□□□□ 0.23
VRK3-212ENST00000596814 ZNF202O95125 648 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 ICAM3P32942 547 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 LACTBP83111 547 aaPredicted RBP16.5■□□□□ 0.23
VRK3-212ENST00000596814 ITGB3BPQ13352 177 aaPredicted RBP16.5■□□□□ 0.23
VRK3-212ENST00000596814 PPP2R5CQ13362 524 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 NCAPH2Q6IBW4 605 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 PDILTQ8N807 584 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 RASSF8Q8NHQ8 419 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 SNX29Q8TEQ0 813 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 MAML3Q96JK9 1138 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 PYM1Q9BRP8 204 aaKnown RBP16.5■□□□□ 0.23
VRK3-212ENST00000596814 TBC1D22BQ9NU19 505 aa16.5■□□□□ 0.23
VRK3-212ENST00000596814 DOCK5Q9H7D0 1870 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 SPATA31C2B4DYI2 1134 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 KRT79Q5XKE5 535 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 SEPT14Q6ZU15 432 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 OTOP1Q7RTM1 612 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 NPLOC4Q8TAT6 608 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 NUP62CLQ9H1M0 184 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 CCDC39Q9UFE4 941 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 TCEAL9Q9UHQ7 104 aa16.49■□□□□ 0.23
VRK3-212ENST00000596814 A0A087X0B3 334 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 DDX39AO00148 427 aaKnown RBP16.48■□□□□ 0.23
VRK3-212ENST00000596814 CHMP2AO43633 222 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 ATP9AO75110 1047 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms