RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 HERC6Q8IVU3 1022 aa14.47□□□□□ -0.09
UPF1-203ENST00000594504 C7orf31Q8N865 590 aa14.47□□□□□ -0.09
UPF1-203ENST00000594504 NCOA7Q8NI08 942 aa14.47□□□□□ -0.09
UPF1-203ENST00000594504 ATXN2LQ8WWM7 1075 aaKnown RBP14.47□□□□□ -0.09
UPF1-203ENST00000594504 SLC9A7Q96T83 725 aa14.47□□□□□ -0.09
UPF1-203ENST00000594504 RIOX1Q9H6W3 641 aa14.47□□□□□ -0.09
UPF1-203ENST00000594504 BAZ2BQ9UIF8 2168 aaKnown RBP14.46□□□□□ -0.09
UPF1-203ENST00000594504 HAS3O00219 553 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 CKBP12277 381 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 SELPP16109 830 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 MRPS5P82675 430 aaKnown RBP14.46□□□□□ -0.09
UPF1-203ENST00000594504 GHRHRQ02643 423 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 TAP1Q03518 808 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 HSDL1Q3SXM5 330 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 CELF3Q5SZQ8 465 aaKnown RBP14.46□□□□□ -0.09
UPF1-203ENST00000594504 MYSM1Q5VVJ2 828 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 LRRC8DQ7L1W4 858 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 VSIG10LQ86VR7 867 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 CCDC155Q8N6L0 562 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 PPTC7Q8NI37 304 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 CAGE1Q8TC20 777 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 PHOSPHO2Q8TCD6 241 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 AFAP1L1Q8TED9 768 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 ARNTL2Q8WYA1 636 aa14.46□□□□□ -0.09
UPF1-203ENST00000594504 EMID1Q96A84 441 aaPredicted RBP14.46□□□□□ -0.09
UPF1-203ENST00000594504 TCF20Q9UGU0 1960 aaKnown RBP14.45□□□□□ -0.1
UPF1-203ENST00000594504 LCHNA4D1U4 455 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 GCOM1H8Y6P7 765 aaPredicted RBP14.45□□□□□ -0.1
UPF1-203ENST00000594504 TNFRSF10AO00220 468 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 GGPS1O95749 300 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 POLR2MP0CAP2 368 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 ANTXR2P58335 489 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 WDR5P61964 334 aaKnown RBP14.45□□□□□ -0.1
UPF1-203ENST00000594504 DEFB103AP81534 67 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 TFF2Q03403 129 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 WTAPQ15007 396 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 ZNF618Q5T7W0 954 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 SPATA33Q96N06 139 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 MAP3K20Q9NYL2 800 aaKnown RBP14.45□□□□□ -0.1
UPF1-203ENST00000594504 RTEL1Q9NZ71 1219 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 MTCH2Q9Y6C9 303 aa14.45□□□□□ -0.1
UPF1-203ENST00000594504 PNMA6FA0A0J9YX94 578 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 ERICH2A1L162 156 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 KIF28PB7ZC32 967 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 EPB41L2O43491 1005 aaKnown RBP14.44□□□□□ -0.1
UPF1-203ENST00000594504 TLL1O43897 1013 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 F2P00734 622 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 KCNJ6P48051 423 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 TROAPQ12815 778 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 SART3Q15020 963 aaKnown RBP14.44□□□□□ -0.1
UPF1-203ENST00000594504 SKIV2LQ15477 1246 aaKnown RBP14.44□□□□□ -0.1
UPF1-203ENST00000594504 TRIM71Q2Q1W2 868 aaKnown RBP14.44□□□□□ -0.1
UPF1-203ENST00000594504 TRAF7Q6Q0C0 670 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 MB21D2Q8IYB1 491 aaPredicted RBP14.44□□□□□ -0.1
UPF1-203ENST00000594504 IGDCC4Q8TDY8 1250 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 ADAMTS19Q8TE59 1207 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 C16orf70Q9BSU1 422 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 MYL10Q9BUA6 226 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 KATNAL1Q9BW62 490 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 TELO2Q9Y4R8 837 aa14.44□□□□□ -0.1
UPF1-203ENST00000594504 PPFIA4O75335 1185 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 BAIAP3O94812 1187 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 CXCL10P02778 98 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 UBA1P22314 1058 aaKnown RBP14.43□□□□□ -0.1
UPF1-203ENST00000594504 CCND2P30279 289 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 MRPS9P82933 396 aaKnown RBP14.43□□□□□ -0.1
UPF1-203ENST00000594504 PTK7Q13308 1070 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 COL9A3Q14050 684 aaPredicted RBP14.43□□□□□ -0.1
UPF1-203ENST00000594504 MBTPS1Q14703 1052 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 TSGA10IPQ3SY00 556 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 FAM117BQ6P1L5 589 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 CNKSR3Q6P9H4 555 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 NECAB3Q96P71 396 aaPredicted RBP14.43□□□□□ -0.1
UPF1-203ENST00000594504 ZBED2Q9BTP6 218 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 MLXIPQ9HAP2 919 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 DOCK5Q9H7D0 1870 aa14.43□□□□□ -0.1
UPF1-203ENST00000594504 HOXD8P13378 290 aaPredicted RBP14.42□□□□□ -0.1
UPF1-203ENST00000594504 KCNQ1P51787 676 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 RBL2Q08999 1139 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 GRB10Q13322 594 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 KRT32Q14532 448 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 KCNV1Q6PIU1 500 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.42□□□□□ -0.1
UPF1-203ENST00000594504 SAMD3Q8N6K7 520 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 MTA3Q9BTC8 594 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 OSBPL7Q9BZF2 842 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 PRUNE2Q8WUY3 3088 aa14.42□□□□□ -0.1
UPF1-203ENST00000594504 GTPBP6O43824 516 aaPredicted RBP14.41□□□□□ -0.1
UPF1-203ENST00000594504 LPXNO60711 386 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 BMP1P13497 986 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 POU3F3P20264 500 aaPredicted RBP14.41□□□□□ -0.1
UPF1-203ENST00000594504 MCM5P33992 734 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 HSPA4P34932 840 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 SEMA3FQ13275 785 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 USP17L6PQ6QN14 398 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 CATIPQ7Z7H3 387 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 CMTR1Q8N1G2 835 aaKnown RBP14.41□□□□□ -0.1
UPF1-203ENST00000594504 KCNB2Q92953 911 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 UHRF1Q96T88 793 aaPredicted RBP14.41□□□□□ -0.1
UPF1-203ENST00000594504 TSPYL2Q9H2G4 693 aaPredicted RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms