RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 PGM5Q15124 567 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 KIAA0753Q2KHM9 967 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 KRT40Q6A162 431 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 CNKSR3Q6P9H4 555 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 IL31RAQ8NI17 732 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 UHRF1Q96T88 793 aaPredicted RBP13.66□□□□□ -0.22
CLIP3-204ENST00000590559 UBAC1Q9BSL1 405 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 CERS4Q9HA82 394 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 MRVI1Q9Y6F6 885 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 FRMPD4Q14CM0 1322 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 C5orf42Q9H799 3197 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 KIF28PB7ZC32 967 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 CYP21A2P08686 494 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 ZNF286BP0CG31 522 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 TGFB3P10600 412 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 DEFB103AP81534 67 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 TROAPQ12815 778 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 GRM4Q14833 912 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 HSDL1Q3SXM5 330 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 CELF3Q5SZQ8 465 aaKnown RBP13.65□□□□□ -0.22
CLIP3-204ENST00000590559 KCNV1Q6PIU1 500 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 DHX37Q8IY37 1157 aaKnown RBP13.65□□□□□ -0.22
CLIP3-204ENST00000590559 C7orf31Q8N865 590 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 C16orf70Q9BSU1 422 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 KATNAL1Q9BW62 490 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 SENP2Q9HC62 589 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 PCDHA1Q9Y5I3 950 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 BRWD1Q9NSI6 2320 aa13.65□□□□□ -0.22
CLIP3-204ENST00000590559 RBAK-RBAKDNI3L0D1 243 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 TLL1O43897 1013 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 DHX16O60231 1041 aaKnown RBP13.64□□□□□ -0.23
CLIP3-204ENST00000590559 GJB5O95377 273 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 HOXA13P31271 388 aaPredicted RBP13.64□□□□□ -0.23
CLIP3-204ENST00000590559 CHMP4BP1P59074 171 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 ZNF200P98182 395 aaPredicted RBP13.64□□□□□ -0.23
CLIP3-204ENST00000590559 PTH1RQ03431 593 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 GRB10Q13322 594 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 ZNF618Q5T7W0 954 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 TTC22Q5TAA0 569 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 TMCO2Q7Z6W1 182 aaPredicted RBP13.64□□□□□ -0.23
CLIP3-204ENST00000590559 ARNTL2Q8WYA1 636 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 GPKOWQ92917 476 aaPredicted RBP eCLIP13.64□□□□□ -0.23
CLIP3-204ENST00000590559 PIGSQ96S52 555 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 ALG1Q9BT22 464 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 TSPYL2Q9H2G4 693 aaPredicted RBP13.64□□□□□ -0.23
CLIP3-204ENST00000590559 LMCD1Q9NZU5 365 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 TAF6LQ9Y6J9 622 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 TRIOO75962 3097 aa13.64□□□□□ -0.23
CLIP3-204ENST00000590559 ABHD14A-ACY1A0A1B0GW23 586 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 GTPBP6O43824 516 aaPredicted RBP13.63□□□□□ -0.23
CLIP3-204ENST00000590559 UBA1P22314 1058 aaKnown RBP13.63□□□□□ -0.23
CLIP3-204ENST00000590559 KCNJ6P48051 423 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 KCNQ1P51787 676 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 MRPS9P82933 396 aaKnown RBP13.63□□□□□ -0.23
CLIP3-204ENST00000590559 SERINC5Q86VE9 423 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 MICALL1Q8N3F8 863 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 NECAB3Q96P71 396 aaPredicted RBP13.63□□□□□ -0.23
CLIP3-204ENST00000590559 RAD9AQ99638 391 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 BCAS3Q9H6U6 928 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 COG5Q9UP83 839 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 NLRC5Q86WI3 1866 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 COL4A6Q14031 1691 aa13.63□□□□□ -0.23
CLIP3-204ENST00000590559 PNMA6FA0A0J9YX94 578 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 EFCAB14O75071 495 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 GGPS1O95749 300 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 MYCLP12524 364 aaPredicted RBP13.62□□□□□ -0.23
CLIP3-204ENST00000590559 COL9A1P20849 921 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 CHMLP26374 656 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 ICAM3P32942 547 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 ERVK-21P61565 698 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 AAK1Q2M2I8 961 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 SPATA33Q96N06 139 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 ATG2AQ2TAZ0 1938 aa13.62□□□□□ -0.23
CLIP3-204ENST00000590559 RALGAPA2Q2PPJ7 1873 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 KAT6AQ92794 2004 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 LINC01553A4QN01 128 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 E7EWF7 191 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 GCOM1H8Y6P7 765 aaPredicted RBP13.61□□□□□ -0.23
CLIP3-204ENST00000590559 POLR2MP0CAP2 368 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 CCND2P30279 289 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 ANTXR2P58335 489 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 HTRA4P83105 476 aaPredicted RBP13.61□□□□□ -0.23
CLIP3-204ENST00000590559 TRAF1Q13077 416 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 SEMA3FQ13275 785 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 IKBKEQ14164 716 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 PLEKHG4Q58EX7 1191 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 IGDCC4Q8TDY8 1250 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 INPP4AQ96PE3 977 aaPredicted RBP13.61□□□□□ -0.23
CLIP3-204ENST00000590559 SUGCTQ9HAC7 445 aa13.61□□□□□ -0.23
CLIP3-204ENST00000590559 U3KPZ7 1027 aaPredicted RBP13.61□□□□□ -0.23
CLIP3-204ENST00000590559 SPATA31C2B4DYI2 1134 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 H3BRB1 525 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 IFIT3O14879 490 aaKnown RBP13.6□□□□□ -0.23
CLIP3-204ENST00000590559 SGSM2O43147 1006 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 LGR5O75473 907 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 STAM2O75886 525 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 ADAM17P78536 824 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 TRDNQ13061 729 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.6□□□□□ -0.23
CLIP3-204ENST00000590559 HOMER1Q86YM7 354 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms