RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 GCC1Q96CN9 775 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 GPRASP2Q96D09 838 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 HEXIM2Q96MH2 286 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 SEMA4AQ9H3S1 761 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 USP54Q70EL1 1684 aa2.52□□□□□ -2.01
SMCHD1-211ENST00000584897 ARFGEF1Q9Y6D6 1849 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 PRRG2O14669 202 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ENC1O14682 589 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 CTSBP07858 339 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 NAT1P18440 290 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ATF3P18847 181 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 AFF3P51826 1226 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 RING1Q06587 406 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 SLBPQ14493 270 aaKnown RBP eCLIP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 PPP2R5EQ16537 467 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF568Q3ZCX4 644 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF605Q86T29 641 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 PANK1Q8TE04 598 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF526Q8TF50 670 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 XAGE3Q8WTP9 111 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 GPATCH3Q96I76 525 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 RHOVQ96L33 236 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 CDK5RAP1Q96SZ6 601 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 LMO7Q8WWI1 1683 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 PHRF1Q9P1Y6 1649 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 LINC00310P59036 64 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 APOBRQ0VD83 1088 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 EZH2Q15910 746 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 RASIP1Q5U651 963 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 KIAA0825Q8IV33 1275 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 CHST13Q8NET6 341 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 USP33Q8TEY7 942 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 CHST7Q9NS84 486 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 REV1Q9UBZ9 1251 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 TJP2Q9UDY2 1190 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 PCDHB5Q9Y5E4 795 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 MRVI1Q9Y6F6 885 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 MEGF6O75095 1541 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 IFT172Q9UG01 1749 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 TECPR2O15040 1411 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 NAIPQ13075 1403 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ANKARQ7Z5J8 1434 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 CNTNAP4Q9C0A0 1308 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 TLDC2A0PJX2 215 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 PLSCR1O15162 318 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 NASPP49321 788 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF143P52747 638 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 GJA9P57773 515 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF394Q53GI3 561 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 INTS3Q68E01 1043 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 ZC3H14Q6PJT7 736 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 CEP128Q6ZU80 1094 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 CXorf38Q8TB03 319 aa2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 LIN37Q96GY3 246 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 LUC7LQ9NQ29 371 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 TYW1Q9NV66 732 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 BRCA1P38398 1863 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-211ENST00000584897 TOMM70O94826 608 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 PAK2Q13177 524 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 PTPROQ16827 1216 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 TTLL10Q6ZVT0 673 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 FAM214BQ7L5A3 538 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 FILIP1Q7Z7B0 1213 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 TTLL6Q8N841 843 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 GRIN3AQ8TCU5 1115 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 MAP6Q96JE9 813 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 CCDC140Q96MF4 163 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 LRRC3Q9BY71 257 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 ST14Q9Y5Y6 855 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 NRXN1Q9ULB1 1477 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 DYNC1LI2O43237 492 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 MARCH6O60337 910 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 DNAJC6O75061 913 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 CILPO75339 1184 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 CELA3AP09093 270 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 ZEB1P37275 1124 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF124Q15973 351 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 ZC3H12BQ5HYM0 836 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 UBXN11Q5T124 520 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF662Q6ZS27 426 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 FAM196AQ6ZSG2 479 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 KRTAP1-3Q8IUG1 177 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 DTWD2Q8NBA8 298 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 TM9SF2Q99805 663 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 MTFR1LQ9H019 292 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 TCEAL9Q9UHQ7 104 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 TCFL5Q9UL49 500 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 COA3Q9Y2R0 106 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 SBNO2Q9Y2G9 1366 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 COL18A1P39060 1754 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 GREM1O60565 184 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 BMP8BP34820 402 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 MAPKAPK2P49137 400 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 TNK2Q07912 1038 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 ADGRF1Q5T601 910 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 GORABQ5T7V8 394 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 EP400NLQ6ZTU2 488 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 DCP2Q8IU60 420 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 RPUSD2Q8IZ73 545 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 TAB3Q8N5C8 712 aaPredicted RBP2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms