RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	MUC3A	Q02505	3323 aa		13.49	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	NBN	O60934	754 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	F2	P00734	622 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	POLR2M	P0CAP2	368 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	UBA1	P22314	1058 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	CCND2	P30279	289 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	KCNJ6	P48051	423 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	WDR5	P61964	334 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	DEFB103A	P81534	67 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	HIC1	Q14526	733 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	HSDL1	Q3SXM5	330 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	CELF3	Q5SZQ8	465 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	VSIG10L	Q86VR7	867 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	NCOA7	Q8NI08	942 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	EMID1	Q96A84	441 aa	Predicted RBP	13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	ASB2	Q96Q27	587 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	MYL10	Q9BUA6	226 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	BCAS3	Q9H6U6	928 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	RIOX1	Q9H6W3	641 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	XIRP2	A4UGR9	3374 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	PTPRS	Q13332	1948 aa		13.48	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	PNMA6F	A0A0J9YX94	578 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	LCHN	A4D1U4	455 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	KIF28P	B7ZC32	967 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	HAS3	O00219	553 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	SGSM2	O43147	1006 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	TLL1	O43897	1013 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	BAIAP3	O94812	1187 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	ANTXR2	P58335	489 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	MRPS5	P82675	430 aa	Known RBP	13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	GHRHR	Q02643	423 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	TFF2	Q03403	129 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	TAP1	Q03518	808 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	TROAP	Q12815	778 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	SART3	Q15020	963 aa	Known RBP	13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	MYSM1	Q5VVJ2	828 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	FAM117B	Q6P1L5	589 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	CATIP	Q7Z7H3	387 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	PHOSPHO2	Q8TCD6	241 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	MLXIP	Q9HAP2	919 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	RTEL1	Q9NZ71	1219 aa		13.47	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	TNFRSF10A	O00220	468 aa		13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	GTPBP6	O43824	516 aa	Predicted RBP	13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	ZNF618	Q5T7W0	954 aa		13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	CNKSR3	Q6P9H4	555 aa		13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	IL27	Q8NEV9	243 aa		13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	ADAMTS19	Q8TE59	1207 aa		13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	ZBED2	Q9BTP6	218 aa		13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	MAP3K20	Q9NYL2	800 aa	Known RBP	13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	RBM8A	Q9Y5S9	174 aa	Known RBP	13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	MTCH2	Q9Y6C9	303 aa		13.46	□□□□□ -0.25
CDK5RAP3-223	ENST00000582114	THPO	P40225	353 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	MRPS9	P82933	396 aa	Known RBP	13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	SP4	Q02446	784 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	PTK7	Q13308	1070 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	COL9A3	Q14050	684 aa	Predicted RBP	13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	MBTPS1	Q14703	1052 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	TRIM71	Q2Q1W2	868 aa	Known RBP	13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	KCNV1	Q6PIU1	500 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	TRAF7	Q6Q0C0	670 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	RAB11FIP4	Q86YS3	637 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	IGDCC4	Q8TDY8	1250 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	GDPD5	Q8WTR4	605 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	NECAB3	Q96P71	396 aa	Predicted RBP	13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	UHRF1	Q96T88	793 aa	Predicted RBP	13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	C16orf70	Q9BSU1	422 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	MTUS1	Q9ULD2	1270 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	TELO2	Q9Y4R8	837 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	TTC28	Q96AY4	2481 aa		13.45	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	DOCK5	Q9H7D0	1870 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	TCF20	Q9UGU0	1960 aa	Known RBP	13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	NOP56	O00567	594 aa	Known RBP	13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	PPFIA4	O75335	1185 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	CXCL10	P02778	98 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	HOXD8	P13378	290 aa	Predicted RBP	13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	RXRA	P19793	462 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	RBL2	Q08999	1139 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	TRAF1	Q13077	416 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	GRB10	Q13322	594 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	USP17L6P	Q6QN14	398 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	CYFIP1	Q7L576	1253 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	ZNF654	Q8IZM8	581 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	CMTR1	Q8N1G2	835 aa	Known RBP	13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	SAMD3	Q8N6K7	520 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	MAP4K1	Q92918	833 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	LY9	Q9HBG7	655 aa		13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	COL4A4	P53420	1690 aa	Predicted RBP	13.44	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	C17orf102	A2RUQ5	167 aa		13.43	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114		H3BRB1	525 aa		13.43	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	PRC1	O43663	620 aa		13.43	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	PLEKHA8P1	O95397	391 aa		13.43	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	LGALS2	P05162	132 aa		13.43	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	CTSH	P09668	335 aa		13.43	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	SMIM10L2A	P0DMW4	78 aa		13.43	□□□□□ -0.26
CDK5RAP3-223	ENST00000582114	SMIM10L2B	P0DMW5	78 aa		13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms