RNA–Protein interactions for RNA: ENST00000573328.5

NPLOC4-212, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2

Gene NPLOC4, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-212ENST00000573328 PBX4Q9BYU1 374 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 FTOQ9C0B1 505 aaKnown RBP eCLIP11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 MLXIPQ9HAP2 919 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 CXXC1Q9P0U4 656 aaPredicted RBP11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 SLC4A7Q9Y6M7 1214 aa11.13□□□□□ -0.63
NPLOC4-212ENST00000573328 PITPNM1O00562 1244 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 RGS20O76081 388 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 FGD1P98174 961 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 COL9A3Q14050 684 aaPredicted RBP11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 MFSD10Q14728 455 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 KIAA0753Q2KHM9 967 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 CELF3Q5SZQ8 465 aaKnown RBP11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 RASIP1Q5U651 963 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 GDF6Q6KF10 455 aaPredicted RBP11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 USP17L6PQ6QN14 398 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 SRBD1Q8N5C6 995 aaKnown RBP11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 KAT2BQ92831 832 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 GPKOWQ92917 476 aaPredicted RBP eCLIP11.12□□□□□ -0.637e-6■□□□□ 8.1
NPLOC4-212ENST00000573328 TCEANC2Q96MN5 208 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 NEK1Q96PY6 1258 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 ZNF576Q9H609 170 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 RTEL1Q9NZ71 1219 aa11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 NAP1L2Q9ULW6 460 aaPredicted RBP11.12□□□□□ -0.63
NPLOC4-212ENST00000573328 CHD9Q3L8U1 2897 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 MICAL3Q7RTP6 2002 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 hCG_1642624A0A1W2PR95 340 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 STAM2O75886 525 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 F2P00734 622 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 NEFLP07196 543 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 TGFB3P10600 412 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 SMARCA1P28370 1054 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 RFC2P35250 354 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 KRT32Q14532 448 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 HSDL1Q3SXM5 330 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 MYSM1Q5VVJ2 828 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 TMTC3Q6ZXV5 915 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 HEATR3Q7Z4Q2 680 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 FANCBQ8NB91 859 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 CAGE1Q8TC20 777 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 GAS2L1Q99501 681 aaPredicted RBP11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 NKX2-4Q9H2Z4 354 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 SLC28A3Q9HAS3 691 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 HDAC6Q9UBN7 1215 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 GTF2IRD1Q9UHL9 959 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 PRUNE2Q8WUY3 3088 aa11.11□□□□□ -0.63
NPLOC4-212ENST00000573328 FRMPD4Q14CM0 1322 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 SPDYE3A6NKU9 549 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 ZBTB43O43298 467 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 FIBPO43427 364 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 IQCF3P0C7M6 154 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 ATP2A2P16615 1042 aaKnown RBP11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 RABGGTBP53611 331 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 MRPS9P82933 396 aaKnown RBP11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 SP2Q02086 613 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 SP4Q02446 784 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 NEDD9Q14511 834 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 GRIN2CQ14957 1233 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 RTN1Q16799 776 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 APOA5Q6Q788 366 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 CYFIP1Q7L576 1253 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 NLRX1Q86UT6 975 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 SESTD1Q86VW0 696 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 SGMS1Q86VZ5 419 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 AFAP1L1Q8TED9 768 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 PSTPIP2Q9H939 334 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 EHMT1Q9H9B1 1298 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 RBM28Q9NW13 759 aaKnown RBP11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 A0A0C4DFX4 3053 aa11.1□□□□□ -0.63
NPLOC4-212ENST00000573328 CNTNAP5Q8WYK1 1306 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 COL4A4P53420 1690 aaPredicted RBP11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 KLF18A0A0U1RQI7 1052 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 GOLGA8AA7E2F4 631 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 GOLGA8BA8MQT2 603 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 PIK3CDO00329 1044 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 DLL1O00548 723 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 MEIS2O14770 477 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 PPFIA4O75335 1185 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 SELPP16109 830 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 KCNJ6P48051 423 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 NAPAP54920 295 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 UBE2SQ16763 222 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 ADCK5Q3MIX3 580 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 PCNX4Q63HM2 1172 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 PPP2R2DQ66LE6 453 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 LRRC8DQ7L1W4 858 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 DHX32Q7L7V1 743 aaKnown RBP11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 INPP4AQ96PE3 977 aaPredicted RBP11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 SLC9A7Q96T83 725 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 PRDM12Q9H4Q4 367 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 LOXHD1Q8IVV2 1947 aa11.09□□□□□ -0.63
NPLOC4-212ENST00000573328 CHD7Q9P2D1 2997 aa11.08□□□□□ -0.64
NPLOC4-212ENST00000573328 SIP14410 1827 aa11.08□□□□□ -0.64
NPLOC4-212ENST00000573328 C17orf102A2RUQ5 167 aa11.08□□□□□ -0.64
NPLOC4-212ENST00000573328 HAS3O00219 553 aa11.08□□□□□ -0.64
NPLOC4-212ENST00000573328 LGALS2P05162 132 aa11.08□□□□□ -0.64
NPLOC4-212ENST00000573328 HMGB1P09429 215 aaKnown RBP11.08□□□□□ -0.64
NPLOC4-212ENST00000573328 CKBP12277 381 aa11.08□□□□□ -0.64
NPLOC4-212ENST00000573328 HOXD8P13378 290 aaPredicted RBP11.08□□□□□ -0.64
NPLOC4-212ENST00000573328 ICAM3P32942 547 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms