RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 TMEM57Q8N5G2 664 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 TMEM87AQ8NBN3 555 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 SSH3Q8TE77 659 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 NXPE3Q969Y0 559 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 PLD4Q96BZ4 506 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 ZNF512BQ96KM6 892 aaPredicted RBP11.26□□□□□ -0.61
CIITA-208ENST00000572665 LPIN3Q9BQK8 851 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 RNF208Q9H0X6 261 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 PPP4R2Q9NY27 417 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 FRRS1LQ9P0K9 344 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 FPGT-TNNI3KV9GXZ4 949 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 TMEM238LA0A1B0GVL6 79 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 PDE2AO00408 941 aaPredicted RBP11.25□□□□□ -0.61
CIITA-208ENST00000572665 SCAMP3O14828 347 aaKnown RBP11.25□□□□□ -0.61
CIITA-208ENST00000572665 ADCY3O60266 1144 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 HLA-DOAP06340 250 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 ASNSP08243 561 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 SLURP2P0DP57 97 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 GMPRP36959 345 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 CAP2P40123 477 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 GJA8P48165 433 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 HNRNPUQ00839 825 aaKnown RBP eCLIP11.25□□□□□ -0.61
CIITA-208ENST00000572665 PRKCZQ05513 592 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 FAM110CQ1W6H9 321 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 HABP4Q5JVS0 413 aaKnown RBP11.25□□□□□ -0.61
CIITA-208ENST00000572665 ERC1Q8IUD2 1116 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 FOXP4Q8IVH2 680 aaPredicted RBP11.25□□□□□ -0.61
CIITA-208ENST00000572665 ITPRIPQ8IWB1 547 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 CRACR2BQ8N4Y2 399 aaPredicted RBP11.25□□□□□ -0.61
CIITA-208ENST00000572665 C3orf58Q8NDZ4 430 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 SMG9Q9H0W8 520 aaKnown RBP11.25□□□□□ -0.61
CIITA-208ENST00000572665 TMOD4Q9NZQ9 345 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 LOC285556D6RIA3 1793 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 FOCADQ5VW36 1801 aa11.25□□□□□ -0.61
CIITA-208ENST00000572665 SMNDC1O75940 238 aaKnown RBP eCLIP11.24□□□□□ -0.61
CIITA-208ENST00000572665 WFS1O76024 890 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 CCL5P13501 91 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 ALAS2P22557 587 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 GRIA4P48058 902 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 SPP2Q13103 211 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 HSP90AB4PQ58FF6 505 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 CEP135Q66GS9 1140 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 PSAPL1Q6NUJ1 521 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 ELMSAN1Q6PJG2 1045 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 C1orf229Q6ZS94 237 aaPredicted RBP11.24□□□□□ -0.61
CIITA-208ENST00000572665 DPF3Q92784 378 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 AATFQ9NY61 560 aaKnown RBP eCLIP11.24□□□□□ -0.61
CIITA-208ENST00000572665 STARD13Q9Y3M8 1113 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 NR2E3Q9Y5X4 410 aa11.24□□□□□ -0.61
CIITA-208ENST00000572665 METTL12A8MUP2 240 aa11.23□□□□□ -0.61
CIITA-208ENST00000572665 C19orf81C9J6K1 198 aa11.23□□□□□ -0.61
CIITA-208ENST00000572665 CTGFP29279 349 aa11.23□□□□□ -0.61
CIITA-208ENST00000572665 FLT3LGP49771 235 aa11.23□□□□□ -0.61
CIITA-208ENST00000572665 MICALL1Q8N3F8 863 aa11.23□□□□□ -0.61
CIITA-208ENST00000572665 ANKRD13CQ8N6S4 541 aa11.23□□□□□ -0.61
CIITA-208ENST00000572665 SH3RF3Q8TEJ3 882 aaPredicted RBP11.23□□□□□ -0.61
CIITA-208ENST00000572665 ZNF384Q8TF68 577 aa11.23□□□□□ -0.61
CIITA-208ENST00000572665 POP1Q99575 1024 aaKnown RBP11.23□□□□□ -0.61
CIITA-208ENST00000572665 NOP58Q9Y2X3 529 aaKnown RBP11.23□□□□□ -0.61
CIITA-208ENST00000572665 CDK5RAP2Q96SN8 1893 aa11.23□□□□□ -0.61
CIITA-208ENST00000572665 XRCC5P13010 732 aaKnown RBP11.22□□□□□ -0.61
CIITA-208ENST00000572665 HMGCS2P54868 508 aa11.22□□□□□ -0.61
CIITA-208ENST00000572665 IRX3P78415 501 aaPredicted RBP11.22□□□□□ -0.61
CIITA-208ENST00000572665 MAP3K12Q12852 859 aa11.22□□□□□ -0.61
CIITA-208ENST00000572665 SPRED3Q2MJR0 410 aa11.22□□□□□ -0.61
CIITA-208ENST00000572665 MEI1Q5TIA1 1274 aa11.22□□□□□ -0.61
CIITA-208ENST00000572665 U2AF1L4Q8WU68 220 aaKnown RBP11.22□□□□□ -0.61
CIITA-208ENST00000572665 TGFBRAP1Q8WUH2 860 aa11.22□□□□□ -0.61
CIITA-208ENST00000572665 ZNF775Q96BV0 537 aaPredicted RBP11.22□□□□□ -0.61
CIITA-208ENST00000572665 DBNDD2Q9BQY9 259 aa11.22□□□□□ -0.61
CIITA-208ENST00000572665 WDR18Q9BV38 432 aa11.22□□□□□ -0.61
CIITA-208ENST00000572665 CHMP4BQ9H444 224 aaKnown RBP11.22□□□□□ -0.61
CIITA-208ENST00000572665 MYH1P12882 1939 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 HTTP42858 3142 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 FLT1P17948 1338 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 SGPL1O95470 568 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 TFRCP02786 760 aaKnown RBP11.21□□□□□ -0.61
CIITA-208ENST00000572665 ITPKAP23677 461 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 BACE1P56817 501 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 TTF1Q15361 905 aaPredicted RBP11.21□□□□□ -0.61
CIITA-208ENST00000572665 TREML2Q5T2D2 321 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 DTHD1Q6ZMT9 781 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 CCAR1Q8IX12 1150 aaKnown RBP11.21□□□□□ -0.61
CIITA-208ENST00000572665 ASAP3Q8TDY4 903 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 TTC9Q92623 222 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 GABRQQ9UN88 632 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 TNNQ9UQP3 1299 aa11.21□□□□□ -0.61
CIITA-208ENST00000572665 A0A096LPE4 126 aa11.2□□□□□ -0.62
CIITA-208ENST00000572665 A0A1W2PPZ6 126 aa11.2□□□□□ -0.62
CIITA-208ENST00000572665 OIP5O43482 229 aa11.2□□□□□ -0.62
CIITA-208ENST00000572665 IDH1O75874 414 aaKnown RBP11.2□□□□□ -0.62
CIITA-208ENST00000572665 FARP2O94887 1054 aaPredicted RBP11.2□□□□□ -0.62
CIITA-208ENST00000572665 CYP7A1P22680 504 aa11.2□□□□□ -0.62
CIITA-208ENST00000572665 HOXA7P31268 230 aaPredicted RBP11.2□□□□□ -0.62
CIITA-208ENST00000572665 FANCCQ00597 558 aa11.2□□□□□ -0.62
CIITA-208ENST00000572665 ADAMTSL4Q6UY14 1074 aa11.2□□□□□ -0.62
CIITA-208ENST00000572665 TTC6Q86TZ1 520 aa11.2□□□□□ -0.62
CIITA-208ENST00000572665 METTL16Q86W50 562 aaKnown RBP11.2□□□□□ -0.62
CIITA-208ENST00000572665 MAPKAPK5Q8IW41 473 aa11.2□□□□□ -0.62
CIITA-208ENST00000572665 GALNT6Q8NCL4 622 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms