RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SCFD2Q8WU76 684 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 PIBF1Q8WXW3 757 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 CUL5Q93034 780 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 IWS1Q96ST2 819 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 SPZ1Q9BXG8 430 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 LRRC2Q9BYS8 371 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 UBE2OQ9C0C9 1292 aaKnown RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 PDGFCQ9NRA1 345 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 RBM28Q9NW13 759 aaKnown RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 NAP1L2Q9ULW6 460 aaPredicted RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 GNEQ9Y223 722 aaKnown RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 DDX49Q9Y6V7 483 aaKnown RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 TTC28Q96AY4 2481 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 ZNFX1Q9P2E3 1918 aaKnown RBP9.35□□□□□ -0.91
VPS53-214ENST00000572607 RBM47A0AV96 593 aaKnown RBP9.35□□□□□ -0.91
VPS53-214ENST00000572607 ZBTB43O43298 467 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 ADCY6O43306 1168 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 EPB41L2O43491 1005 aaKnown RBP9.35□□□□□ -0.91
VPS53-214ENST00000572607 CYTH3O43739 400 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 CLTBP09497 229 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 TXNP10599 105 aaKnown RBP9.35□□□□□ -0.91
VPS53-214ENST00000572607 EIF2AK2P19525 551 aaKnown RBP9.35□□□□□ -0.91
VPS53-214ENST00000572607 RXRAP19793 462 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 PSMA5P28066 241 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 HSPA4P34932 840 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 HSD17B4P51659 736 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 NKX3-2P78367 333 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 MDM2Q00987 491 aaPredicted RBP9.35□□□□□ -0.91
VPS53-214ENST00000572607 BEX3Q00994 111 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 TLE2Q04725 743 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 E2F4Q16254 413 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 CCSAPQ6IQ19 270 aaPredicted RBP9.35□□□□□ -0.91
VPS53-214ENST00000572607 BLOC1S2Q6QNY1 142 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 SGMS1Q86VZ5 419 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 FANCBQ8NB91 859 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 TBC1D5Q92609 795 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 JAKMIP1Q96N16 626 aaKnown RBP9.35□□□□□ -0.91
VPS53-214ENST00000572607 TAAR1Q96RJ0 339 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 POLR3EQ9NVU0 708 aa9.35□□□□□ -0.91
VPS53-214ENST00000572607 REV3LO60673 3130 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 EIF5BO60841 1220 aaKnown RBP9.34□□□□□ -0.91
VPS53-214ENST00000572607 PPP1R11O60927 126 aaPredicted RBP9.34□□□□□ -0.91
VPS53-214ENST00000572607 EIF3JO75822 258 aaKnown RBP9.34□□□□□ -0.91
VPS53-214ENST00000572607 PLEKHA8P1O95397 391 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 MYCLP12524 364 aaPredicted RBP9.34□□□□□ -0.91
VPS53-214ENST00000572607 PRSS12P56730 875 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 GHRHRQ02643 423 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 RTN1Q16799 776 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 ADCK5Q3MIX3 580 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 CXCL17Q6UXB2 119 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 SEPT14Q6ZU15 432 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 TMTC3Q6ZXV5 915 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 FCHSD1Q86WN1 690 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 RAB11FIP4Q86YS3 637 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 SMARCC2Q8TAQ2 1214 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 TCEANC2Q96MN5 208 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 TOX2Q96NM4 488 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 SEZ6LQ9BYH1 1024 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 PDLIM7Q9NR12 457 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 PXMP2Q9NR77 195 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 TMEM39AQ9NV64 488 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 COL20A1Q9P218 1284 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 MRVI1Q9Y6F6 885 aa9.34□□□□□ -0.91
VPS53-214ENST00000572607 KLF18A0A0U1RQI7 1052 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 CCDC196A0A1B0GTZ2 297 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 GOLGA8AA7E2F4 631 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 GOLGA8BA8MQT2 603 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 ARVCFO00192 962 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 KPNA6O60684 536 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 GH1P01241 217 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 NR3C2P08235 984 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 MYL3P08590 195 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 RAG1P15918 1043 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 CCND2P30279 289 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 HOXA13P31271 388 aaPredicted RBP9.33□□□□□ -0.92
VPS53-214ENST00000572607 EXOSC10Q01780 885 aaKnown RBP9.33□□□□□ -0.92
VPS53-214ENST00000572607 SLC35G1Q2M3R5 365 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 KCNV1Q6PIU1 500 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 APOA5Q6Q788 366 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 ANKRD33Q7Z3H0 272 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 CMTR1Q8N1G2 835 aaKnown RBP9.33□□□□□ -0.92
VPS53-214ENST00000572607 CCDC82Q8N4S0 544 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 SRBD1Q8N5C6 995 aaKnown RBP9.33□□□□□ -0.92
VPS53-214ENST00000572607 KCNB2Q92953 911 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 FAM161BQ96MY7 647 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 CHD9Q3L8U1 2897 aa9.33□□□□□ -0.92
VPS53-214ENST00000572607 SMCHD1A6NHR9 2005 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 LRRC37A2A6NM11 1700 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 OPLAHO14841 1288 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 KIAA0355O15063 1070 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 CTAGE5O15320 804 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 CASTP20810 708 aaKnown RBP9.32□□□□□ -0.92
VPS53-214ENST00000572607 METAP2P50579 478 aaKnown RBP eCLIP9.32□□□□□ -0.92
VPS53-214ENST00000572607 RCAN1P53805 252 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 ITGA7Q13683 1181 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 PGM5Q15124 567 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 GNPTABQ3T906 1256 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 TMEM63BQ5T3F8 832 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 Q6ZUG5 572 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 HEATR3Q7Z4Q2 680 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms