RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 STK3Q13188 491 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 LAMC2Q13753 1193 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 NTRK3Q16288 839 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 UBE2SQ16763 222 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 LY6KQ17RY6 165 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 CXCL17Q6UXB2 119 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 DHX37Q8IY37 1157 aaKnown RBP11.24□□□□□ -0.61
CLN6-209ENST00000569336 REXO1Q8N1G1 1221 aaKnown RBP11.24□□□□□ -0.61
CLN6-209ENST00000569336 GIMAP8Q8ND71 665 aaPredicted RBP11.24□□□□□ -0.61
CLN6-209ENST00000569336 PPTC7Q8NI37 304 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 LBHD1Q9BQE6 289 aaPredicted RBP11.24□□□□□ -0.61
CLN6-209ENST00000569336 MTG1Q9BT17 334 aaPredicted RBP11.24□□□□□ -0.61
CLN6-209ENST00000569336 PRDM5Q9NQX1 630 aaPredicted RBP11.24□□□□□ -0.61
CLN6-209ENST00000569336 PDLIM7Q9NR12 457 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 SH3GLB2Q9NR46 395 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 DDX41Q9UJV9 622 aaKnown RBP11.24□□□□□ -0.61
CLN6-209ENST00000569336 ZMYND8Q9ULU4 1186 aaPredicted RBP11.24□□□□□ -0.61
CLN6-209ENST00000569336 PTPRSQ13332 1948 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 STK36Q9NRP7 1315 aa11.24□□□□□ -0.61
CLN6-209ENST00000569336 TRANK1O15050 2925 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 NOP56O00567 594 aaKnown RBP11.23□□□□□ -0.61
CLN6-209ENST00000569336 RGS20O76081 388 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 SEC24BO95487 1268 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 GGPS1O95749 300 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 MMP3P08254 477 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 MYL3P08590 195 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 SYN1P17600 705 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 UBA1P22314 1058 aaKnown RBP11.23□□□□□ -0.61
CLN6-209ENST00000569336 ICAM3P32942 547 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 NEK4P51957 841 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 IRX5P78411 483 aaPredicted RBP11.23□□□□□ -0.61
CLN6-209ENST00000569336 MRPS9P82933 396 aaKnown RBP11.23□□□□□ -0.61
CLN6-209ENST00000569336 ITGA7Q13683 1181 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 NEDD9Q14511 834 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 DGKDQ16760 1214 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 TMEM63BQ5T3F8 832 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 TYW1BQ6NUM6 668 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 IL27Q8NEV9 243 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 COPS5Q92905 334 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 GPRASP2Q96D09 838 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 KATNAL1Q9BW62 490 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 COL25A1Q9BXS0 654 aaPredicted RBP11.23□□□□□ -0.61
CLN6-209ENST00000569336 ANO3Q9BYT9 981 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 ZMYND12Q9H0C1 365 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 PCDHA6Q9UN73 950 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 PCDHA8Q9Y5H6 950 aa11.23□□□□□ -0.61
CLN6-209ENST00000569336 PFKFB2O60825 505 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 XBP1P17861 261 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 SREBF1P36956 1147 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 CLK2P49760 499 aaKnown RBP11.22□□□□□ -0.61
CLN6-209ENST00000569336 MTMR1Q13613 665 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 PKN1Q16512 942 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 CELF3Q5SZQ8 465 aaKnown RBP11.22□□□□□ -0.61
CLN6-209ENST00000569336 FAM126BQ8IXS8 530 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 AFG1LQ8WV93 481 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 WASF1Q92558 559 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 SPATA33Q96N06 139 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 SENP7Q9BQF6 1050 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 C22orf23Q9BZE7 217 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 MLXIPQ9HAP2 919 aa11.22□□□□□ -0.61
CLN6-209ENST00000569336 NLRC5Q86WI3 1866 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 SPATA31C2B4DYI2 1134 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 KIAA0355O15063 1070 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 MAFGO15525 162 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 PTGS1P23219 599 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 BMP8BP34820 402 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 MAGEA10P43363 369 aaPredicted RBP11.21□□□□□ -0.61
CLN6-209ENST00000569336 RBM25P49756 843 aaKnown RBP11.21□□□□□ -0.61
CLN6-209ENST00000569336 CDK7P50613 346 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 PTPN11Q06124 597 aaPredicted RBP11.21□□□□□ -0.61
CLN6-209ENST00000569336 SCRN1Q12765 414 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 MYSM1Q5VVJ2 828 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 GALNT17Q6IS24 598 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 NFRKBQ6P4R8 1299 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 METTL7BQ6UX53 244 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 SLC43A3Q8NBI5 491 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 GTF3C6Q969F1 213 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 LRCH3Q96II8 777 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 GDF15Q99988 308 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 LARP6Q9BRS8 491 aaKnown RBP11.21□□□□□ -0.61
CLN6-209ENST00000569336 TMEM39AQ9NV64 488 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 RTEL1Q9NZ71 1219 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 TPCN1Q9ULQ1 816 aa11.21□□□□□ -0.61
CLN6-209ENST00000569336 MYH11P35749 1972 aa11.21□□□□□ -0.62
CLN6-209ENST00000569336 CUL9Q8IWT3 2517 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 A0A0C4DFX4 3053 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 PPFIA4O75335 1185 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 F2P00734 622 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 SUPT20HL2P0C7V6 817 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 HOXD8P13378 290 aaPredicted RBP11.2□□□□□ -0.62
CLN6-209ENST00000569336 RAG1P15918 1043 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 ZNF76P36508 570 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 NLRP5P59047 1200 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 PSMC6P62333 389 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 ARHGAP4P98171 946 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 SETQ01105 290 aaPredicted RBP11.2□□□□□ -0.62
CLN6-209ENST00000569336 FAAP100Q0VG06 881 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 FAM47CQ5HY64 1035 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 UBE2OQ9C0C9 1292 aaKnown RBP11.2□□□□□ -0.62
CLN6-209ENST00000569336 VPS54Q9P1Q0 977 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms