RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 PDE4DQ08499 809 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 STXBP2Q15833 593 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 CCL14Q16627 93 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 FOXD4L6Q3SYB3 417 aaPredicted RBP9.61□□□□□ -0.87
SF3B3-212ENST00000568539 TTC38Q5R3I4 469 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 OLFML2BQ68BL8 750 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 PPP4R3AQ6IN85 833 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 MOXD1Q6UVY6 613 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 FOXD4L3Q6VB84 417 aaPredicted RBP9.61□□□□□ -0.87
SF3B3-212ENST00000568539 ARMCX2Q7L311 632 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 MSL3Q8N5Y2 521 aaKnown RBP9.61□□□□□ -0.87
SF3B3-212ENST00000568539 LENG9Q96B70 501 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 MBOAT7Q96N66 472 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 MPHOSPH6Q99547 160 aaKnown RBP9.61□□□□□ -0.87
SF3B3-212ENST00000568539 NAP1L4Q99733 375 aaKnown RBP9.61□□□□□ -0.87
SF3B3-212ENST00000568539 MXRA8Q9BRK3 442 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 TINF2Q9BSI4 451 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 OCEL1Q9H607 264 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 FLRT1Q9NZU1 646 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 PCDHB6Q9Y5E3 794 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 ATP6V1DQ9Y5K8 247 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 UBIAD1Q9Y5Z9 338 aa9.61□□□□□ -0.87
SF3B3-212ENST00000568539 SYNGAP1Q96PV0 1343 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 MEIS1O00470 390 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 SLC37A4O43826 429 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 CCNT1O60563 726 aaKnown RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 EIF3JO75822 258 aaKnown RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 RGS20O76081 388 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 SNAI1O95863 264 aaPredicted RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 DNM1Q05193 864 aaKnown RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 ORC2Q13416 577 aaPredicted RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 DSG2Q14126 1118 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 ZNF174Q15697 407 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 Q4G0T1 1027 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 CEP55Q53EZ4 464 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 PRPF38BQ5VTL8 546 aaKnown RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 ATL3Q6DD88 541 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 OTOP1Q7RTM1 612 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 NIPA1Q7RTP0 329 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 CYP2W1Q8TAV3 490 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 TRIB2Q92519 343 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 TNPO1Q92973 898 aaKnown RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 CHAMP1Q96JM3 812 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 ZNF396Q96N95 335 aaPredicted RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 INPP4AQ96PE3 977 aaPredicted RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 USP28Q96RU2 1077 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 FTOQ9C0B1 505 aaKnown RBP eCLIP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 KATNBL1Q9H079 304 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 JADE2Q9NQC1 790 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 RTEL1Q9NZ71 1219 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 TRIM17Q9Y577 477 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 CLIC4Q9Y696 253 aa9.6□□□□□ -0.87
SF3B3-212ENST00000568539 RBBP6Q7Z6E9 1792 aaKnown RBP9.6□□□□□ -0.87
SF3B3-212ENST00000568539 MKI67P46013 3256 aaKnown RBP9.59□□□□□ -0.87
SF3B3-212ENST00000568539 CYP2C19P33261 490 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 MCM7P33993 719 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 ZNF76P36508 570 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 MTMR1Q13613 665 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 SF3A1Q15459 793 aaKnown RBP9.59□□□□□ -0.87
SF3B3-212ENST00000568539 PRR16Q569H4 304 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 ANO1Q5XXA6 986 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 TRMT44Q8IYL2 757 aaKnown RBP9.59□□□□□ -0.87
SF3B3-212ENST00000568539 C4orf32Q8N8J7 132 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 GPRASP2Q96D09 838 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 WDR11Q9BZH6 1224 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 VTA1Q9NP79 307 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 POLR3EQ9NVU0 708 aa9.59□□□□□ -0.87
SF3B3-212ENST00000568539 TFIP11Q9UBB9 837 aaKnown RBP9.59□□□□□ -0.87
SF3B3-212ENST00000568539 DDX25Q9UHL0 483 aaKnown RBP9.59□□□□□ -0.87
SF3B3-212ENST00000568539 ZSWIM8A7E2V4 1837 aa9.59□□□□□ -0.88
SF3B3-212ENST00000568539 SZT2Q5T011 3432 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 SPATA31C2B4DYI2 1134 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 MSH4O15457 936 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 MAFGO15525 162 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 FIBPO43427 364 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 ADCY3O60266 1144 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 NEMFO60524 1076 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 YEATS4O95619 227 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 ARP10275 920 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 ELNP15502 786 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 ICAM3P32942 547 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 NASPP49321 788 aaPredicted RBP9.58□□□□□ -0.88
SF3B3-212ENST00000568539 KRT85P78386 507 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 SETQ01105 290 aaPredicted RBP9.58□□□□□ -0.88
SF3B3-212ENST00000568539 CEBPZQ03701 1054 aaKnown RBP9.58□□□□□ -0.88
SF3B3-212ENST00000568539 SEMA3FQ13275 785 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 PTPAQ15257 358 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 GNPTABQ3T906 1256 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 TAPT1Q6NXT6 567 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 EEPD1Q7L9B9 569 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 NLRX1Q86UT6 975 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 PLA2G4DQ86XP0 818 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 FBXO16Q8IX29 292 aaPredicted RBP9.58□□□□□ -0.88
SF3B3-212ENST00000568539 ETNPPLQ8TBG4 499 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 RAET1EQ8TD07 263 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 PXYLP1Q8TE99 480 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 MTMR9Q96QG7 549 aa9.58□□□□□ -0.88
SF3B3-212ENST00000568539 TMEM60Q9H2L4 133 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms