RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 ASB2Q96Q27 587 aa19.52■□□□□ 0.72
CLN3-231ENST00000568422 PTPRSQ13332 1948 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 STAM2O75886 525 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 CKBP12277 381 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 MRPS5P82675 430 aaKnown RBP19.51■□□□□ 0.71
CLN3-231ENST00000568422 CCDC85BQ15834 202 aaPredicted RBP19.51■□□□□ 0.71
CLN3-231ENST00000568422 DHX38Q92620 1227 aaKnown RBP19.51■□□□□ 0.71
CLN3-231ENST00000568422 MAP4K1Q92918 833 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 MAP3K14Q99558 947 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 ALG1Q9BT22 464 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 MTA3Q9BTC8 594 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 PRDM6Q9NQX0 595 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 REV3LO60673 3130 aa19.51■□□□□ 0.71
CLN3-231ENST00000568422 CYTH3O43739 400 aa19.5■□□□□ 0.71
CLN3-231ENST00000568422 GGPS1O95749 300 aa19.5■□□□□ 0.71
CLN3-231ENST00000568422 CXCL10P02778 98 aa19.5■□□□□ 0.71
CLN3-231ENST00000568422 ZNF286BP0CG31 522 aa19.5■□□□□ 0.71
CLN3-231ENST00000568422 SLC35G1Q2M3R5 365 aa19.5■□□□□ 0.71
CLN3-231ENST00000568422 HSDL1Q3SXM5 330 aa19.5■□□□□ 0.71
CLN3-231ENST00000568422 GNPTABQ3T906 1256 aa19.5■□□□□ 0.71
CLN3-231ENST00000568422 CNKSR3Q6P9H4 555 aa19.5■□□□□ 0.71
CLN3-231ENST00000568422 TTC28Q96AY4 2481 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 MUC3AQ02505 3323 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 ABHD14A-ACY1A0A1B0GW23 586 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 GTPBP6O43824 516 aaPredicted RBP19.49■□□□□ 0.71
CLN3-231ENST00000568422 EFCAB14O75071 495 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 SMARCA1P28370 1054 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 GPNMBQ14956 572 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 FCHSD1Q86WN1 690 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 IL31RAQ8NI17 732 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 IGDCC4Q8TDY8 1250 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 MLXIPQ9HAP2 919 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 SENP2Q9HC62 589 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 FRMPD4Q14CM0 1322 aa19.49■□□□□ 0.71
CLN3-231ENST00000568422 TNFRSF10AO00220 468 aa19.48■□□□□ 0.71
CLN3-231ENST00000568422 TLL1O43897 1013 aa19.48■□□□□ 0.71
CLN3-231ENST00000568422 UBA1P22314 1058 aaKnown RBP19.48■□□□□ 0.71
CLN3-231ENST00000568422 KIF5BP33176 963 aa19.48■□□□□ 0.71
CLN3-231ENST00000568422 WDR5P61964 334 aaKnown RBP19.48■□□□□ 0.71
CLN3-231ENST00000568422 SP2Q02086 613 aa19.48■□□□□ 0.71
CLN3-231ENST00000568422 TAP1Q03518 808 aa19.48■□□□□ 0.71
CLN3-231ENST00000568422 MB21D2Q8IYB1 491 aaPredicted RBP19.48■□□□□ 0.71
CLN3-231ENST00000568422 TMTC2Q8N394 836 aa19.48■□□□□ 0.71
CLN3-231ENST00000568422 SPZ1Q9BXG8 430 aa19.48■□□□□ 0.71
CLN3-231ENST00000568422 TAF6LQ9Y6J9 622 aa19.48■□□□□ 0.71
CLN3-231ENST00000568422 NBNO60934 754 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 DDAH1O94760 285 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 ANTXR2P58335 489 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 IKBKEQ14164 716 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 NEDD9Q14511 834 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 AAK1Q2M2I8 961 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 IL27Q8NEV9 243 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 CTCFLQ8NI51 663 aaPredicted RBP19.47■□□□□ 0.71
CLN3-231ENST00000568422 LZTS2Q9BRK4 669 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 C16orf70Q9BSU1 422 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 MTCH2Q9Y6C9 303 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 EMSYQ7Z589 1322 aa19.47■□□□□ 0.71
CLN3-231ENST00000568422 ICAM3P32942 547 aa19.46■□□□□ 0.71
CLN3-231ENST00000568422 GNAQP50148 359 aa19.46■□□□□ 0.71
CLN3-231ENST00000568422 TRIM71Q2Q1W2 868 aaKnown RBP19.46■□□□□ 0.71
CLN3-231ENST00000568422 XRRA1Q6P2D8 792 aa19.46■□□□□ 0.71
CLN3-231ENST00000568422 CASC1Q6TDU7 716 aa19.46■□□□□ 0.71
CLN3-231ENST00000568422 CUL5Q93034 780 aa19.46■□□□□ 0.71
CLN3-231ENST00000568422 RRP36Q96EU6 259 aaKnown RBP19.46■□□□□ 0.71
CLN3-231ENST00000568422 INPP4AQ96PE3 977 aaPredicted RBP19.46■□□□□ 0.71
CLN3-231ENST00000568422 ZBED2Q9BTP6 218 aa19.46■□□□□ 0.71
CLN3-231ENST00000568422 RBM8AQ9Y5S9 174 aaKnown RBP19.46■□□□□ 0.71
CLN3-231ENST00000568422 XIRP2A4UGR9 3374 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 H3BRB1 525 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 PIK3CDO00329 1044 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 MRPS9P82933 396 aaKnown RBP19.45■□□□□ 0.7
CLN3-231ENST00000568422 ZNF618Q5T7W0 954 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 METTL7BQ6UX53 244 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 SERINC5Q86VE9 423 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 ZNF654Q8IZM8 581 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 MICALL1Q8N3F8 863 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 ARNTL2Q8WYA1 636 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 USP26Q9BXU7 913 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 TUT1Q9H6E5 874 aaKnown RBP19.45■□□□□ 0.7
CLN3-231ENST00000568422 CERS4Q9HA82 394 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 LY9Q9HBG7 655 aa19.45■□□□□ 0.7
CLN3-231ENST00000568422 SEC63Q9UGP8 760 aaKnown RBP19.45■□□□□ 0.7
CLN3-231ENST00000568422 DOCK5Q9H7D0 1870 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 C17orf102A2RUQ5 167 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 SPATA31C2B4DYI2 1134 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 NOP56O00567 594 aaKnown RBP19.44■□□□□ 0.7
CLN3-231ENST00000568422 FIBPO43427 364 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 SORBS3O60504 671 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 HOXC8P31273 242 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 MCM5P33992 734 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 TRAF7Q6Q0C0 670 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 SMARCC2Q8TAQ2 1214 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 ADAMTS19Q8TE59 1207 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 GPKOWQ92917 476 aaPredicted RBP eCLIP19.44■□□□□ 0.7
CLN3-231ENST00000568422 TMEM87BQ96K49 555 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 RAD9AQ99638 391 aa19.44■□□□□ 0.7
CLN3-231ENST00000568422 PRRC2BQ5JSZ5 2229 aaKnown RBP19.44■□□□□ 0.7
CLN3-231ENST00000568422 RFXAPO00287 272 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 CAND2O75155 1236 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 LGR5O75473 907 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms