RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FERMT2Q96AC1 680 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 UIMC1Q96RL1 719 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 MXRA8Q9BRK3 442 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 AP5M1Q9H0R1 490 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 Q9Y3F1 56 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 STAM2O75886 525 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 CYP3A4P08684 503 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 ARP10275 920 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 XBP1P17861 261 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 GJB2P29033 226 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 GNASQ5JWF2 1037 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 RNF180Q86T96 592 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 TBCKQ8TEA7 893 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 SNX21Q969T3 373 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 C8orf76Q96K31 380 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 JADE2Q9NQC1 790 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 PKD2L1Q9P0L9 805 aa22.31■■□□□ 1.16
CLN3-225ENST00000566824 BTBD18B2RXH4 712 aa22.3■■□□□ 1.16
CLN3-225ENST00000566824 FIBPO43427 364 aa22.3■■□□□ 1.16
CLN3-225ENST00000566824 GGPS1O95749 300 aa22.3■■□□□ 1.16
CLN3-225ENST00000566824 CST5P28325 142 aaPredicted RBP22.3■■□□□ 1.16
CLN3-225ENST00000566824 FSCN1Q16658 493 aaKnown RBP22.3■■□□□ 1.16
CLN3-225ENST00000566824 MCTP2Q6DN12 878 aa22.3■■□□□ 1.16
CLN3-225ENST00000566824 FAM184AQ8NB25 1140 aa22.3■■□□□ 1.16
CLN3-225ENST00000566824 AFG1LQ8WV93 481 aa22.3■■□□□ 1.16
CLN3-225ENST00000566824 C11orf49Q9H6J7 331 aa22.3■■□□□ 1.16
CLN3-225ENST00000566824 PHF24Q9UPV7 400 aa22.3■■□□□ 1.16
CLN3-225ENST00000566824 DNAH12Q6ZR08 3092 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 IGLV3-22A0A075B6J6 115 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 KBTBD13C9JR72 458 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 K7ELQ4 463 aaPredicted RBP22.29■■□□□ 1.16
CLN3-225ENST00000566824 MEIS1O00470 390 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 NKRFO15226 690 aaKnown RBP eCLIP22.29■■□□□ 1.16
CLN3-225ENST00000566824 GH1P01241 217 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 KRT2P35908 639 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 ACLYP53396 1101 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 INF2Q27J81 1249 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 GNPTABQ3T906 1256 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 CEP55Q53EZ4 464 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 CELF3Q5SZQ8 465 aaKnown RBP22.29■■□□□ 1.16
CLN3-225ENST00000566824 NECAB2Q7Z6G3 386 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 NLRX1Q86UT6 975 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 DIS3L2Q8IYB7 885 aaKnown RBP22.29■■□□□ 1.16
CLN3-225ENST00000566824 GPRASP2Q96D09 838 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 SENP6Q9GZR1 1112 aaPredicted RBP22.29■■□□□ 1.16
CLN3-225ENST00000566824 FOXD4L1Q9NU39 408 aa22.29■■□□□ 1.16
CLN3-225ENST00000566824 ASGR1P07306 291 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 KCNA2P16389 499 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 CAPN2P17655 700 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 MTMR1Q13613 665 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 TRIM29Q14134 588 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 MYSM1Q5VVJ2 828 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 PIK3AP1Q6ZUJ8 805 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 KRT25Q7Z3Z0 450 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 FBXO18Q8NFZ0 1043 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 SPC25Q9HBM1 224 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 KCNH7Q9NS40 1196 aa22.28■■□□□ 1.16
CLN3-225ENST00000566824 A0A1W2PQ45 241 aaPredicted RBP22.27■■□□□ 1.16
CLN3-225ENST00000566824 A0A1W2PQY0 241 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 A6NJR5 290 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 TDP2O95551 362 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 TGFB3P10600 412 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 ZNF76P36508 570 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 NONOQ15233 471 aaKnown RBP eCLIP22.27■■□□□ 1.16
CLN3-225ENST00000566824 HSDL1Q3SXM5 330 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 KCNV1Q6PIU1 500 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 CXCL17Q6UXB2 119 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 CYFIP1Q7L576 1253 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 DHX37Q8IY37 1157 aaKnown RBP22.27■■□□□ 1.16
CLN3-225ENST00000566824 LENG9Q96B70 501 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 TSEN34Q9BSV6 310 aaKnown RBP22.27■■□□□ 1.16
CLN3-225ENST00000566824 SMC3Q9UQE7 1217 aa22.27■■□□□ 1.16
CLN3-225ENST00000566824 KIF28PB7ZC32 967 aa22.26■■□□□ 1.15
CLN3-225ENST00000566824 WNT7AO00755 349 aa22.26■■□□□ 1.15
CLN3-225ENST00000566824 CIITAP33076 1130 aa22.26■■□□□ 1.15
CLN3-225ENST00000566824 ATN1P54259 1190 aaPredicted RBP22.26■■□□□ 1.15
CLN3-225ENST00000566824 ITGB3BPQ13352 177 aaPredicted RBP22.26■■□□□ 1.15
CLN3-225ENST00000566824 PLA2G4DQ86XP0 818 aa22.26■■□□□ 1.15
CLN3-225ENST00000566824 PPP1R13LQ8WUF5 828 aa22.26■■□□□ 1.15
CLN3-225ENST00000566824 EMID1Q96A84 441 aaPredicted RBP22.26■■□□□ 1.15
CLN3-225ENST00000566824 AGO4Q9HCK5 861 aaKnown RBP22.26■■□□□ 1.15
CLN3-225ENST00000566824 CCDC194A0A1B0GVG4 234 aa22.25■■□□□ 1.15
CLN3-225ENST00000566824 MMP3P08254 477 aa22.25■■□□□ 1.15
CLN3-225ENST00000566824 MYL3P08590 195 aa22.25■■□□□ 1.15
CLN3-225ENST00000566824 LAMC2Q13753 1193 aa22.25■■□□□ 1.15
CLN3-225ENST00000566824 LRRC26Q2I0M4 334 aa22.25■■□□□ 1.15
CLN3-225ENST00000566824 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.25■■□□□ 1.15
CLN3-225ENST00000566824 PDE4DIPQ5VU43 2346 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 USP11P51784 963 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 PSMC6P62333 389 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 SP4Q02446 784 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 PRR16Q569H4 304 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 NIPA1Q7RTP0 329 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 PCSK9Q8NBP7 692 aaKnown RBP22.24■■□□□ 1.15
CLN3-225ENST00000566824 GJA10Q969M2 543 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 SPATA33Q96N06 139 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 PCDH10Q9P2E7 1040 aa22.24■■□□□ 1.15
CLN3-225ENST00000566824 SCN10AQ9Y5Y9 1956 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 GRIN2DO15399 1336 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 MOXD2PA6NHM9 499 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms