RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 HIC1Q14526 733 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 ANKRD1Q15327 319 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 HSDL1Q3SXM5 330 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 TRIM60Q495X7 471 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 MYSM1Q5VVJ2 828 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 JAKMIP3Q5VZ66 844 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 CXCL17Q6UXB2 119 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 TEX2Q8IWB9 1127 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 PHF20Q9BVI0 1012 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 SLKQ9H2G2 1235 aaPredicted RBP11.3□□□□□ -0.6
CLN3-220ENST00000566040 SH3GLB2Q9NR46 395 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 RTEL1Q9NZ71 1219 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 KCNJ14Q9UNX9 436 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 MOXD2PA6NHM9 499 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 KBTBD13C9JR72 458 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 H0YGN5 161 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 SORBS3O60504 671 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 PSMC6P62333 389 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 SSRP1Q08945 709 aaKnown RBP11.29□□□□□ -0.6
CLN3-220ENST00000566040 ITGB3BPQ13352 177 aaPredicted RBP11.29□□□□□ -0.6
CLN3-220ENST00000566040 AP3B2Q13367 1082 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 TTLL4Q14679 1199 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 RABEP1Q15276 862 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 GNASQ5JWF2 1037 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 SH3RF1Q7Z6J0 888 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 RNF180Q86T96 592 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 OR6J1Q8NGC5 347 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 AFG1LQ8WV93 481 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 VWCEQ96DN2 955 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 PDLIM7Q9NR12 457 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 RBM27Q9P2N5 1060 aaKnown RBP11.29□□□□□ -0.6
CLN3-220ENST00000566040 LIMCH1Q9UPQ0 1083 aa11.29□□□□□ -0.6
CLN3-220ENST00000566040 KAT6AQ92794 2004 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 HAS3O00219 553 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 NKRFO15226 690 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLN3-220ENST00000566040 DHX15O43143 795 aaKnown RBP11.28□□□□□ -0.6
CLN3-220ENST00000566040 EIF5BO60841 1220 aaKnown RBP11.28□□□□□ -0.6
CLN3-220ENST00000566040 GGPS1O95749 300 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 CD4P01730 458 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 CYP3A4P08684 503 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 ARP10275 920 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 ARHGAP4P98171 946 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 CELF3Q5SZQ8 465 aaKnown RBP11.28□□□□□ -0.6
CLN3-220ENST00000566040 XRRA1Q6P2D8 792 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 CCDC83Q8IWF9 413 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 FAM126BQ8IXS8 530 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 C7orf61Q8IZ16 206 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 REXO1Q8N1G1 1221 aaKnown RBP11.28□□□□□ -0.6
CLN3-220ENST00000566040 ORC3Q9UBD5 711 aaPredicted RBP11.28□□□□□ -0.6
CLN3-220ENST00000566040 MRVI1Q9Y6F6 885 aa11.28□□□□□ -0.6
CLN3-220ENST00000566040 EVPLQ92817 2033 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 TRIM43BA6NCK2 446 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 MEIS1O00470 390 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 FIBPO43427 364 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 STAM2O75886 525 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 GH1P01241 217 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 MYCNP04198 464 aaPredicted RBP11.27□□□□□ -0.61
CLN3-220ENST00000566040 CIITAP33076 1130 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 MRPL12P52815 198 aaKnown RBP11.27□□□□□ -0.61
CLN3-220ENST00000566040 TLE2Q04725 743 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 FAAP100Q0VG06 881 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 ANKRD33Q7Z3H0 272 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 TRIM43Q96BQ3 446 aaPredicted RBP11.27□□□□□ -0.61
CLN3-220ENST00000566040 GPRASP2Q96D09 838 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 MBOAT7Q96N66 472 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 PCYT2Q99447 389 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 MXRA8Q9BRK3 442 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 C16orf70Q9BSU1 422 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 JADE2Q9NQC1 790 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 TBX21Q9UL17 535 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 PCDHA4Q9UN74 947 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 ELP1O95163 1332 aa11.27□□□□□ -0.61
CLN3-220ENST00000566040 GSTTP1A0A1W2PQM5 241 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 SPDYE3A6NKU9 549 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 CPLX1O14810 134 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 CCNE2O96020 404 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 F2P00734 622 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 FOSP01100 380 aaPredicted RBP11.26□□□□□ -0.61
CLN3-220ENST00000566040 ZNF286BP0CG31 522 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 TGFB3P10600 412 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 SYN1P17600 705 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 HOXC8P31273 242 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 NR5A1Q13285 461 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 PRPF38BQ5VTL8 546 aaKnown RBP11.26□□□□□ -0.61
CLN3-220ENST00000566040 TRIM50Q86XT4 487 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 TRIM22Q8IYM9 498 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 BLIDQ8IZY5 108 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 CCDC148Q8NFR7 591 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 PPTC7Q8NI37 304 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 TMX3Q96JJ7 454 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 GPR20Q99678 358 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 SENP7Q9BQF6 1050 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 ALG1Q9BT22 464 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 HTATIP2Q9BUP3 242 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 AP5M1Q9H0R1 490 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 AGO4Q9HCK5 861 aaKnown RBP11.26□□□□□ -0.61
CLN3-220ENST00000566040 C6orf50Q9HD87 102 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 KCNH7Q9NS40 1196 aa11.26□□□□□ -0.61
CLN3-220ENST00000566040 ZMYND8Q9ULU4 1186 aaPredicted RBP11.26□□□□□ -0.61
CLN3-220ENST00000566040 UMODL1Q5DID0 1318 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms