RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 KREMEN2Q8NCW0 462 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 PLEKHO2Q8TD55 490 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 DIO2Q92813 273 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 DACT3Q96B18 629 aaPredicted RBP6.39□□□□□ -1.39
VPS35-205ENST00000563984 C8orf37Q96NL8 207 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 HIRIP3Q9BW71 556 aaPredicted RBP6.39□□□□□ -1.39
VPS35-205ENST00000563984 RNF38Q9H0F5 515 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 FBLN5Q9UBX5 448 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 PLA2G2DQ9UNK4 145 aa6.39□□□□□ -1.39
VPS35-205ENST00000563984 IQCA1LA6NCM1 817 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 TCERG1O14776 1098 aaKnown RBP6.38□□□□□ -1.39
VPS35-205ENST00000563984 NCAM1P13591 858 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 FBLN1P23142 703 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 IGFBP6P24592 240 aaPredicted RBP6.38□□□□□ -1.39
VPS35-205ENST00000563984 KCNJ6P48051 423 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 RPL11P62913 178 aaKnown RBP6.38□□□□□ -1.39
VPS35-205ENST00000563984 PUM1Q14671 1186 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS35-205ENST00000563984 INF2Q27J81 1249 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 CNKSR3Q6P9H4 555 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 ZDHHC14Q8IZN3 488 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 OTUD6BQ8N6M0 293 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 DPF3Q92784 378 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 MARCH2Q9P0N8 246 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 NUB1Q9Y5A7 615 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 TIMM13Q9Y5L4 95 aaPredicted RBP6.38□□□□□ -1.39
VPS35-205ENST00000563984 DCAF1Q9Y4B6 1507 aa6.38□□□□□ -1.39
VPS35-205ENST00000563984 A0A1W2PQU0 124 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 CCER2I3L3R5 266 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 ATP2B1P20020 1258 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 LIMS1P48059 325 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 PPP2R2AP63151 447 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 CAP1Q01518 475 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 SF1Q15637 639 aaKnown RBP6.37□□□□□ -1.39
VPS35-205ENST00000563984 HSP90AB3PQ58FF7 597 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 DCP2Q8IU60 420 aaKnown RBP6.37□□□□□ -1.39
VPS35-205ENST00000563984 NLGN1Q8N2Q7 840 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 SYT8Q8NBV8 401 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 ST13P5Q8NFI4 369 aaPredicted RBP6.37□□□□□ -1.39
VPS35-205ENST00000563984 KCTD13Q8WZ19 329 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 ALG3Q92685 438 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 TSPAN18Q96SJ8 248 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 TRIM55Q9BYV6 548 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 TANGO6Q9C0B7 1094 aa6.37□□□□□ -1.39
VPS35-205ENST00000563984 MAGEC2Q9UBF1 373 aaPredicted RBP6.37□□□□□ -1.39
VPS35-205ENST00000563984 FEZ2Q9UHY8 353 aaPredicted RBP6.37□□□□□ -1.39
VPS35-205ENST00000563984 TMEFF2Q9UIK5 374 aaPredicted RBP6.37□□□□□ -1.39
VPS35-205ENST00000563984 OVOL3O00110 214 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 MYO1BO43795 1136 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 ZRANB2O95218 330 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS35-205ENST00000563984 NTRK1P04629 796 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 LTBRP36941 435 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 MAP4K2Q12851 820 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 PRSS53Q2L4Q9 553 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 SLC35F1Q5T1Q4 408 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 MROH9Q5TGP6 573 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 NBPF6Q5VWK0 638 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 EGFL6Q8IUX8 553 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 CCDC103Q8IW40 242 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 PPIL6Q8IXY8 311 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 Q8N1Y9 231 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 TMEM145Q8NBT3 493 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 MKL1Q969V6 931 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 ZNF669Q96BR6 464 aaPredicted RBP6.36□□□□□ -1.39
VPS35-205ENST00000563984 NBPF4Q96M43 638 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 DRC1Q96MC2 740 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 PWWP2AQ96N64 755 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 RXFP1Q9HBX9 757 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 MYRFQ9Y2G1 1151 aa6.36□□□□□ -1.39
VPS35-205ENST00000563984 C22orf46C9J442 243 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 ARNTLO00327 626 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 U2SURPO15042 1029 aaKnown RBP6.35□□□□□ -1.39
VPS35-205ENST00000563984 ASGR2P07307 311 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 FOXD4Q12950 439 aaPredicted RBP6.35□□□□□ -1.39
VPS35-205ENST00000563984 TAF3Q5VWG9 929 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 RIOX2Q8IUF8 465 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 RCBTB1Q8NDN9 531 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 CPA5Q8WXQ8 436 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 ARMC5Q96C12 935 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 C1orf159Q96HA4 380 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 ZNF830Q96NB3 372 aaPredicted RBP6.35□□□□□ -1.39
VPS35-205ENST00000563984 SLC52A1Q9NWF4 448 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 BTG4Q9NY30 223 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 PPP1R1BQ9UD71 204 aaPredicted RBP6.35□□□□□ -1.39
VPS35-205ENST00000563984 FAN1Q9Y2M0 1017 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 X6R8D5 127 aa6.35□□□□□ -1.39
VPS35-205ENST00000563984 BCL6P41182 706 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 GRIA2P42262 883 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 SSR1P43307 286 aaKnown RBP6.34□□□□□ -1.39
VPS35-205ENST00000563984 SLC6A11P48066 632 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 LSAMPQ13449 338 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 CEP68Q76N32 757 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 SEC14L1Q92503 715 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 TRMT2BQ96GJ1 504 aaKnown RBP6.34□□□□□ -1.39
VPS35-205ENST00000563984 TMEM169Q96HH4 297 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 AP5M1Q9H0R1 490 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 MSRB2Q9Y3D2 182 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 NPFFR2Q9Y5X5 522 aa6.34□□□□□ -1.39
VPS35-205ENST00000563984 H7BY64 318 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 EXOC5O00471 708 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 ATF2P15336 505 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms