RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FCHSD1Q86WN1 690 aa19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 C7orf31Q8N865 590 aa19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 DHX38Q92620 1227 aaKnown RBP19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 RRP36Q96EU6 259 aaKnown RBP19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 INPP4AQ96PE3 977 aaPredicted RBP19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 GAS2L1Q99501 681 aaPredicted RBP19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 PRDM12Q9H4Q4 367 aa19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 HDAC6Q9UBN7 1215 aa19.9■□□□□ 0.78
VPS9D1-203ENST00000563798 PRUNE2Q8WUY3 3088 aa19.89■□□□□ 0.78
VPS9D1-203ENST00000563798 ZBBXA8MT70 800 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 BAIAP3O94812 1187 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 GGPS1O95749 300 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 SELPP16109 830 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 MRPS9P82933 396 aaKnown RBP19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 PTK7Q13308 1070 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 SCN5AQ14524 2016 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 KIAA0753Q2KHM9 967 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 GNPTABQ3T906 1256 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 CREB3L3Q68CJ9 461 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 SPATA33Q96N06 139 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 SLC9A7Q96T83 725 aa19.89■□□□□ 0.77
VPS9D1-203ENST00000563798 GBF1Q92538 1859 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 SPATA31C2B4DYI2 1134 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 CALM1P0DP23 149 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 CALM2P0DP24 149 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 CALM3P0DP25 149 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 RABGGTBP53611 331 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 COL9A3Q14050 684 aaPredicted RBP19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 ADGRE1Q14246 886 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 XRRA1Q6P2D8 792 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 C16orf70Q9BSU1 422 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 MYL10Q9BUA6 226 aa19.88■□□□□ 0.77
VPS9D1-203ENST00000563798 MEIS2O14770 477 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 CXCL10P02778 98 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 ZNF286BP0CG31 522 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 CKBP12277 381 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 HOXC8P31273 242 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 CHMP4BP1P59074 171 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 TRIM71Q2Q1W2 868 aaKnown RBP19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 LRRC8DQ7L1W4 858 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 CENPQQ7L2Z9 268 aaPredicted RBP19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 SGMS1Q86VZ5 419 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 SRBD1Q8N5C6 995 aaKnown RBP19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 USP38Q8NB14 1042 aa19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 GPKOWQ92917 476 aaPredicted RBP eCLIP19.87■□□□□ 0.77
VPS9D1-203ENST00000563798 CHD7Q9P2D1 2997 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 MYH7BA7E2Y1 1941 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 CCDC69A6NI79 296 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 PLEKHA8P1O95397 391 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 NEDD9Q14511 834 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 PCNX4Q63HM2 1172 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 TRAF7Q6Q0C0 670 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 METTL7BQ6UX53 244 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 ALG1Q9BT22 464 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 FTOQ9C0B1 505 aaKnown RBP eCLIP19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 MLXIPQ9HAP2 919 aa19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 SEC63Q9UGP8 760 aaKnown RBP19.86■□□□□ 0.77
VPS9D1-203ENST00000563798 FIBPO43427 364 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 MYOGP15173 224 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 SEMA3FQ13275 785 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 PPP2R2DQ66LE6 453 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 USP17L6PQ6QN14 398 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 NFXL1Q6ZNB6 911 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 HERC6Q8IVU3 1022 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 SMARCC2Q8TAQ2 1214 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 PIBF1Q8WXW3 757 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 CUL5Q93034 780 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 ZFP91Q96JP5 570 aaPredicted RBP19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 SENP7Q9BQF6 1050 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 ANO2Q9NQ90 1003 aa19.85■□□□□ 0.77
VPS9D1-203ENST00000563798 TET1Q8NFU7 2136 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 NBNO60934 754 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 POU3F3P20264 500 aaPredicted RBP19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 HIC1Q14526 733 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 TSGA10IPQ3SY00 556 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 RNF20Q5VTR2 975 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 SERINC5Q86VE9 423 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 FANCBQ8NB91 859 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 USP26Q9BXU7 913 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 BCAS3Q9H6U6 928 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 SLC12A7Q9Y666 1083 aa19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 TRIP12Q14669 1992 aaPredicted RBP19.84■□□□□ 0.77
VPS9D1-203ENST00000563798 H3BRB1 525 aa19.83■□□□□ 0.77
VPS9D1-203ENST00000563798 LGALS2P05162 132 aa19.83■□□□□ 0.77
VPS9D1-203ENST00000563798 CNKSR3Q6P9H4 555 aa19.83■□□□□ 0.77
VPS9D1-203ENST00000563798 TMTC3Q6ZXV5 915 aa19.83■□□□□ 0.77
VPS9D1-203ENST00000563798 TEX2Q8IWB9 1127 aa19.83■□□□□ 0.77
VPS9D1-203ENST00000563798 WNT8BQ93098 351 aa19.83■□□□□ 0.77
VPS9D1-203ENST00000563798 TUT1Q9H6E5 874 aaKnown RBP19.83■□□□□ 0.77
VPS9D1-203ENST00000563798 ABHD14A-ACY1A0A1B0GW23 586 aa19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 KIF28PB7ZC32 967 aa19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 CA3P07451 260 aa19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 WDR5P61964 334 aaKnown RBP19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 ZNF200P98182 395 aaPredicted RBP19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 EXOSC10Q01780 885 aaKnown RBP19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 ZNF618Q5T7W0 954 aa19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 SYMPKQ92797 1274 aaKnown RBP19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 GPR20Q99678 358 aa19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 PSTPIP2Q9H939 334 aa19.82■□□□□ 0.76
VPS9D1-203ENST00000563798 RTEL1Q9NZ71 1219 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms