RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CCDC39Q9UFE4 941 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 PPP1R9AQ9ULJ8 1098 aa10.09□□□□□ -0.79
VPS39-207ENST00000563692 BRCA2P51587 3418 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 DOCK3Q8IZD9 2030 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 SPDYE3A6NKU9 549 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 BECN2A8MW95 431 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 GOLGA6L19H0YKK7 550 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 ADAMTS3O15072 1205 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 EVI5O60447 810 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 NEMFO60524 1076 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 MSCO60682 206 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 HOXC6P09630 235 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 OR52Z1P0C646 297 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 SLFN14P0C7P3 912 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 FDX1P10109 184 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 FCER1AP12319 257 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 GCFC2P16383 781 aaKnown RBP10.08□□□□□ -0.8
VPS39-207ENST00000563692 ADORA2AP29274 412 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 STAT3P40763 770 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 UBA7P41226 1012 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 ZNF165P49910 485 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 NLRP12P59046 1061 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 TPM4P67936 248 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 GRIN1Q05586 938 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 CACNB2Q08289 660 aaPredicted RBP10.08□□□□□ -0.8
VPS39-207ENST00000563692 CCL14Q16627 93 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 TMEM266Q2M3C6 531 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 SPECC1Q5M775 1068 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 MAP3K21Q5TCX8 1036 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 PPP4R3AQ6IN85 833 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 UBE2Q1Q7Z7E8 422 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 PRPF38AQ8NAV1 312 aaKnown RBP10.08□□□□□ -0.8
VPS39-207ENST00000563692 SYMPKQ92797 1274 aaKnown RBP10.08□□□□□ -0.8
VPS39-207ENST00000563692 TRIM44Q96DX7 344 aaPredicted RBP10.08□□□□□ -0.8
VPS39-207ENST00000563692 SLF1Q9BQI6 1058 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 PANK2Q9BZ23 570 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 RANBP17Q9H2T7 1088 aaKnown RBP10.08□□□□□ -0.8
VPS39-207ENST00000563692 EHMT1Q9H9B1 1298 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 TMEM260Q9NX78 707 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 SERTAD1Q9UHV2 236 aa10.08□□□□□ -0.8
VPS39-207ENST00000563692 MRPL11Q9Y3B7 192 aaKnown RBP10.08□□□□□ -0.8
VPS39-207ENST00000563692 SMTNL1A8MU46 457 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 H0YGN5 161 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 VWA5AO00534 786 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 ZBED4O75132 1171 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 CNGA1P29973 690 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 PDIA5Q14554 519 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 KCTD2Q14681 263 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 TMEM132BQ14DG7 1078 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 CALCRLQ16602 461 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 USH1GQ495M9 461 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 ABRAQ8N0Z2 381 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 PDILTQ8N807 584 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 RASSF8Q8NHQ8 419 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 DHX58Q96C10 678 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 PAWRQ96IZ0 340 aaKnown RBP10.07□□□□□ -0.8
VPS39-207ENST00000563692 EPSTI1Q96J88 318 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 PPP1R9BQ96SB3 815 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 MMP19Q99542 508 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 DNAJC25Q9H1X3 360 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 FBXO28Q9NVF7 368 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 DACH1Q9UI36 760 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 TUBE1Q9UJT0 475 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 MKI67P46013 3256 aaKnown RBP10.07□□□□□ -0.8
VPS39-207ENST00000563692 MYH4Q9Y623 1939 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 ABCB11O95342 1321 aa10.07□□□□□ -0.8
VPS39-207ENST00000563692 GCOM1H8Y6P7 765 aaPredicted RBP10.06□□□□□ -0.8
VPS39-207ENST00000563692 PIK3CDO00329 1044 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 WNT7AO00755 349 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 POLR2MP0CAP2 368 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 CCND3P30281 292 aaPredicted RBP10.06□□□□□ -0.8
VPS39-207ENST00000563692 POSTNQ15063 836 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 UBE2SQ16763 222 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 RRAGBQ5VZM2 374 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 OLFML2BQ68BL8 750 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 CCDC174Q6PII3 467 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 USP17L6PQ6QN14 398 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 MOXD1Q6UVY6 613 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 MCF2L2Q86YR7 1114 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 RIOX2Q8IUF8 465 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 SAMD3Q8N6K7 520 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 TRIML1Q8N9V2 468 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 NPLOC4Q8TAT6 608 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 SMARCE1Q969G3 411 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 BPIFA3Q9BQP9 254 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 TEX13BQ9BXU2 312 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 CCSER1Q9C0I3 900 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 C11orf49Q9H6J7 331 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 CBX8Q9HC52 389 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 DDX25Q9UHL0 483 aaKnown RBP10.06□□□□□ -0.8
VPS39-207ENST00000563692 OGDHLQ9ULD0 1010 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 ADAMTS5Q9UNA0 930 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 STK24Q9Y6E0 443 aa10.06□□□□□ -0.8
VPS39-207ENST00000563692 BAZ2BQ9UIF8 2168 aaKnown RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 CYP3A7-CYP3A51PA0A087WV96 503 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 MEIS2O14770 477 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 TNRC18O15417 2968 aaPredicted RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 ACTN4O43707 911 aaKnown RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 CYP3A7P24462 503 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 CYP2C19P33261 490 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms