RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SLC39A14Q15043 492 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 ARHGEF6Q15052 776 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 STK38Q15208 465 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 LEO1Q8WVC0 666 aaPredicted RBP18.8■□□□□ 0.6
VPS4A-202ENST00000562754 HAS1Q92839 578 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 GJA10Q969M2 543 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 MTMR9Q96QG7 549 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 KCNH7Q9NS40 1196 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 CFAP45Q9UL16 551 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 TRIM17Q9Y577 477 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 BMP15O95972 392 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 OR52Z1P0C646 297 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 ELNP15502 786 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 ICAM3P32942 547 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 MTMR1Q13613 665 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 CALCRLQ16602 461 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 SEPT14Q6ZU15 432 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 NLRX1Q86UT6 975 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 AGO4Q9HCK5 861 aaKnown RBP18.79■□□□□ 0.6
VPS4A-202ENST00000562754 VTA1Q9NP79 307 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 RCOR1Q9UKL0 485 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 CEP131Q9UPN4 1083 aa18.79■□□□□ 0.6
VPS4A-202ENST00000562754 MORC2Q9Y6X9 1032 aaPredicted RBP18.79■□□□□ 0.6
VPS4A-202ENST00000562754 SPATA31C2B4DYI2 1134 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 MARCKSP29966 332 aaPredicted RBP18.78■□□□□ 0.6
VPS4A-202ENST00000562754 CTCFP49711 727 aaPredicted RBP18.78■□□□□ 0.6
VPS4A-202ENST00000562754 LBX1P52954 281 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 PRMT2P55345 433 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 TRIM32Q13049 653 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 GNPTABQ3T906 1256 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 TAPT1Q6NXT6 567 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 SLC5A5Q92911 643 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 SPATA32Q96LK8 384 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 PDGFCQ9NRA1 345 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 PKD2L1Q9P0L9 805 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 PTCH2Q9Y6C5 1203 aa18.78■□□□□ 0.6
VPS4A-202ENST00000562754 RBM47A0AV96 593 aaKnown RBP18.77■□□□□ 0.6
VPS4A-202ENST00000562754 LAD1O00515 517 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 TBX3O15119 743 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 SPTLC2O15270 562 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 ADCY3O60266 1144 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 ATP9AO75110 1047 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 ARIH2O95376 493 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 KCNA2P16389 499 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 ITGB3BPQ13352 177 aaPredicted RBP18.77■□□□□ 0.6
VPS4A-202ENST00000562754 ACVR2BQ13705 512 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 IL17AQ16552 155 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 PRAMEF19Q5SWL8 479 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 TRMT44Q8IYL2 757 aaKnown RBP18.77■□□□□ 0.6
VPS4A-202ENST00000562754 RAET1EQ8TD07 263 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 SCAND2PQ9GZW5 306 aaPredicted RBP18.77■□□□□ 0.6
VPS4A-202ENST00000562754 ABHD16BQ9H3Z7 469 aa18.77■□□□□ 0.6
VPS4A-202ENST00000562754 FBXO2Q9UK22 296 aaPredicted RBP18.77■□□□□ 0.6
VPS4A-202ENST00000562754 ZHX1Q9UKY1 873 aaPredicted RBP18.77■□□□□ 0.6
VPS4A-202ENST00000562754 IPO5O00410 1097 aaKnown RBP18.76■□□□□ 0.59
VPS4A-202ENST00000562754 ZNF865P0CJ78 1059 aaPredicted RBP18.76■□□□□ 0.59
VPS4A-202ENST00000562754 UBA1P22314 1058 aaKnown RBP18.76■□□□□ 0.59
VPS4A-202ENST00000562754 PRPHP41219 470 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 SP2Q02086 613 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 GRIN1Q05586 938 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 TMEM63BQ5T3F8 832 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 MFSD14CQ5VZR4 134 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 ARL6IP4Q66PJ3 421 aaKnown RBP18.76■□□□□ 0.59
VPS4A-202ENST00000562754 CCDC62Q6P9F0 684 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 TRPV1Q8NER1 839 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 KCNG4Q8TDN1 519 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 CDHR1Q96JP9 859 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 FAM20AQ96MK3 541 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 ZNF577Q9BSK1 485 aa18.76■□□□□ 0.59
VPS4A-202ENST00000562754 DHX15O43143 795 aaKnown RBP18.75■□□□□ 0.59
VPS4A-202ENST00000562754 PPP6R2O75170 966 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 PSMD10O75832 226 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 CYBAP13498 195 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 ADCYAP1R1P41586 468 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 SLFN12Q8IYM2 578 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 TMEM87AQ8NBN3 555 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 PXYLP1Q8TE99 480 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 SCFD2Q8WU76 684 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 GBP4Q96PP9 640 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 BCAS3Q9H6U6 928 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 VAV3Q9UKW4 847 aa18.75■□□□□ 0.59
VPS4A-202ENST00000562754 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.74■□□□□ 0.59
VPS4A-202ENST00000562754 MAFGO15525 162 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 ADCY6O43306 1168 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 HMGCRP04035 888 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 PTGS1P23219 599 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 TXKP42681 527 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 SPIRE1Q08AE8 756 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 LRCH2Q5VUJ6 765 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 SLAIN1Q8ND83 568 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 CLIC6Q96NY7 704 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 RIT2Q99578 217 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 DDX41Q9UJV9 622 aaKnown RBP18.74■□□□□ 0.59
VPS4A-202ENST00000562754 PTPN22Q9Y2R2 807 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 SRPRBQ9Y5M8 271 aaKnown RBP18.74■□□□□ 0.59
VPS4A-202ENST00000562754 NFASCO94856 1347 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 ELP1O95163 1332 aa18.74■□□□□ 0.59
VPS4A-202ENST00000562754 VWA3AA6NCI4 1184 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 MARCH6O60337 910 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 GAS7O60861 476 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms