RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	BARX1	Q9HBU1	254 aa	Predicted RBP	5.11	□□□□□ -1.59
SPG11-222	ENST00000560435	APEX2	Q9UBZ4	518 aa		5.11	□□□□□ -1.59
SPG11-222	ENST00000560435	TIMM13	Q9Y5L4	95 aa	Predicted RBP	5.11	□□□□□ -1.59
SPG11-222	ENST00000560435	B4GALT4	O60513	344 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	GIPR	P48546	466 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	GTF2A2	P52657	109 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	EIF6	P56537	245 aa	Known RBP	5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	FHL2	Q14192	279 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	CHRNA2	Q15822	529 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	IQCE	Q6IPM2	695 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	TEPP	Q6URK8	271 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	NLRP10	Q86W26	655 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	NPLOC4	Q8TAT6	608 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	GINM1	Q9NU53	330 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	CROT	Q9UKG9	612 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	PCDHGB7	Q9Y5F8	929 aa		5.1	□□□□□ -1.59
SPG11-222	ENST00000560435	SOX9	P48436	509 aa		5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	HS1BP3	Q53T59	392 aa		5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	E4F1	Q66K89	784 aa	Predicted RBP	5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	CEP68	Q76N32	757 aa		5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	BVES	Q8NE79	360 aa		5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	FRS2	Q8WU20	508 aa		5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	TRMT2B	Q96GJ1	504 aa	Known RBP	5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	CYP26B1	Q9NR63	512 aa		5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	METTL5	Q9NRN9	209 aa	Known RBP	5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	ADAM29	Q9UKF5	820 aa		5.09	□□□□□ -1.59
SPG11-222	ENST00000560435	TCRBV5S2	A0A599	114 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	NPIPB8	E9PQR5	432 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	HGS	O14964	777 aa	Predicted RBP	5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	FANCC	Q00597	558 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	CYP4F3	Q08477	520 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	FOXE3	Q13461	319 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	MIIP	Q5JXC2	388 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	GTF2IRD2B	Q6EKJ0	949 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	KIAA1211L	Q6NV74	962 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	TRMT10B	Q6PF06	316 aa	Known RBP	5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	GTF2IRD2	Q86UP8	949 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	TRIM59	Q8IWR1	403 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	ARRDC4	Q8NCT1	418 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	NKX2-4	Q9H2Z4	354 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	SEC61A2	Q9H9S3	476 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	C11orf21	Q9P2W6	132 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	COA3	Q9Y2R0	106 aa	Predicted RBP	5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	PCDHB4	Q9Y5E5	795 aa		5.08	□□□□□ -1.6
SPG11-222	ENST00000560435	NOP56	O00567	594 aa	Known RBP	5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	MYO1B	O43795	1136 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	CNOT4	O95628	575 aa	Known RBP	5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	LRG1	P02750	347 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	NAT2	P11245	290 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	COL6A1	P12109	1028 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	BCL6	P41182	706 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	ZNF143	P52747	638 aa	Predicted RBP	5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	SMN1	Q16637	294 aa	Known RBP	5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	EMC4	Q5J8M3	183 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	RNF207	Q6ZRF8	634 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	TMEM169	Q96HH4	297 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	SPATA32	Q96LK8	384 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	APBA2	Q99767	749 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	ZDHHC9	Q9Y397	364 aa		5.07	□□□□□ -1.6
SPG11-222	ENST00000560435	WDR33	Q9C0J8	1336 aa	Known RBP	5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	TADA3	O75528	432 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	INHBE	P58166	350 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	RACK1	P63244	317 aa	Known RBP	5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	ABHD18	Q0P651	414 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	KCNAB2	Q13303	367 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	PRKD1	Q15139	912 aa	Predicted RBP	5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	STEAP3	Q658P3	488 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	VHLL	Q6RSH7	139 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	RALYL	Q86SE5	291 aa	Known RBP	5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	CCDC103	Q8IW40	242 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	DIO2	Q92813	273 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	ZNF503	Q96F45	646 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	MRGPRX3	Q96LB0	322 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	HSPBP1	Q9NZL4	362 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	DDX41	Q9UJV9	622 aa	Known RBP	5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	WASF3	Q9UPY6	502 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	EFR3B	Q9Y2G0	817 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435	SLC4A7	Q9Y6M7	1214 aa		5.06	□□□□□ -1.6
SPG11-222	ENST00000560435		H7BY64	318 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	FOXS1	O43638	330 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	CASP7	P55210	303 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	PPP2R5E	Q16537	467 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	TMC5	Q6UXY8	1006 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	AMER2	Q8N7J2	671 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	NUDT10	Q8NFP7	164 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	CHFR	Q96EP1	664 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	NUDT11	Q96G61	164 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	FBXL7	Q9UJT9	491 aa		5.05	□□□□□ -1.6
SPG11-222	ENST00000560435	KLHL18	O94889	574 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	ZNF202	O95125	648 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	PAK2	Q13177	524 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	TESK1	Q15569	626 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	TCTN3	Q6NUS6	607 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435		Q6ZUG5	572 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	PHOSPHO1	Q8TCT1	267 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	GNRHR2	Q96P88	292 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	ADO	Q96SZ5	270 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	TMEFF2	Q9UIK5	374 aa	Predicted RBP	5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	TIMELESS	Q9UNS1	1208 aa		5.04	□□□□□ -1.6
SPG11-222	ENST00000560435	ARNTL	O00327	626 aa		5.03	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms