RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 MOXD1Q6UVY6 613 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 SEPT14Q6ZU15 432 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 OTOP1Q7RTM1 612 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 PLA2G4DQ86XP0 818 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 MSL3Q8N5Y2 521 aaKnown RBP10.9□□□□□ -0.66
CUX1-216ENST00000558469 RAET1EQ8TD07 263 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 MORC4Q8TE76 937 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 MS4A3Q96HJ5 214 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 MBOAT7Q96N66 472 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 UIMC1Q96RL1 719 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 POLR3EQ9NVU0 708 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 CEP131Q9UPN4 1083 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 CNPY2Q9Y2B0 182 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 TRIM17Q9Y577 477 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 UBIAD1Q9Y5Z9 338 aa10.9□□□□□ -0.66
CUX1-216ENST00000558469 MEIS1O00470 390 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 MARCH6O60337 910 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 RGS20O76081 388 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 SNAI1O95863 264 aaPredicted RBP10.89□□□□□ -0.67
CUX1-216ENST00000558469 ARP10275 920 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 CYP2C19P33261 490 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 CTCFP49711 727 aaPredicted RBP10.89□□□□□ -0.67
CUX1-216ENST00000558469 LBX1P52954 281 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 ORC2Q13416 577 aaPredicted RBP10.89□□□□□ -0.67
CUX1-216ENST00000558469 MTMR1Q13613 665 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 STK38Q15208 465 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 CALCRLQ16602 461 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 NIPA1Q7RTP0 329 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 NLRX1Q86UT6 975 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 IFNLR1Q8IU57 520 aaPredicted RBP10.89□□□□□ -0.67
CUX1-216ENST00000558469 FBXO16Q8IX29 292 aaPredicted RBP10.89□□□□□ -0.67
CUX1-216ENST00000558469 TRMT44Q8IYL2 757 aaKnown RBP10.89□□□□□ -0.67
CUX1-216ENST00000558469 C4orf32Q8N8J7 132 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 LENG9Q96B70 501 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 KIF12Q96FN5 646 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 INPP4AQ96PE3 977 aaPredicted RBP10.89□□□□□ -0.67
CUX1-216ENST00000558469 JADE2Q9NQC1 790 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 KCNH7Q9NS40 1196 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.89□□□□□ -0.67
CUX1-216ENST00000558469 MRVI1Q9Y6F6 885 aa10.89□□□□□ -0.67
CUX1-216ENST00000558469 MYH9P35579 1960 aaKnown RBP10.88□□□□□ -0.67
CUX1-216ENST00000558469 MSH4O15457 936 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 FIBPO43427 364 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 ADCY3O60266 1144 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 BAG4O95429 457 aaKnown RBP10.88□□□□□ -0.67
CUX1-216ENST00000558469 BMP15O95972 392 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 ELNP15502 786 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 NASPP49321 788 aaPredicted RBP10.88□□□□□ -0.67
CUX1-216ENST00000558469 PRMT2P55345 433 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 ATP2C1P98194 919 aaPredicted RBP10.88□□□□□ -0.67
CUX1-216ENST00000558469 SETQ01105 290 aaPredicted RBP10.88□□□□□ -0.67
CUX1-216ENST00000558469 IRF5Q13568 498 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 SLC39A14Q15043 492 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 PTPAQ15257 358 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 GNPTABQ3T906 1256 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 PRAMEF19Q5SWL8 479 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 LINC00301Q8NCQ3 95 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 TRIB2Q92519 343 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 GJA10Q969M2 543 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 GPRASP2Q96D09 838 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 SPATA32Q96LK8 384 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 ZNF577Q9BSK1 485 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 SCAND2PQ9GZW5 306 aaPredicted RBP10.88□□□□□ -0.67
CUX1-216ENST00000558469 TMEM60Q9H2L4 133 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 ABHD16BQ9H3Z7 469 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 GDPD2Q9HCC8 539 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 VTA1Q9NP79 307 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 PKD2L1Q9P0L9 805 aa10.88□□□□□ -0.67
CUX1-216ENST00000558469 SPATA31C2B4DYI2 1134 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 IPO5O00410 1097 aaKnown RBP10.87□□□□□ -0.67
CUX1-216ENST00000558469 LAD1O00515 517 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 SPTLC2O15270 562 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 MAFGO15525 162 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 YEATS4O95619 227 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 IGHA2P01877 340 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 OR52Z1P0C646 297 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 MARCKSP29966 332 aaPredicted RBP10.87□□□□□ -0.67
CUX1-216ENST00000558469 ICAM3P32942 547 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 TXKP42681 527 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 SEMA3FQ13275 785 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 ACVR2BQ13705 512 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 MFSD14CQ5VZR4 134 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 TAPT1Q6NXT6 567 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 SLFN12Q8IYM2 578 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 ETNPPLQ8TBG4 499 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 LEO1Q8WVC0 666 aaPredicted RBP10.87□□□□□ -0.67
CUX1-216ENST00000558469 HAS1Q92839 578 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 CDHR1Q96JP9 859 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 MTMR9Q96QG7 549 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 KATNBL1Q9H079 304 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 AGO4Q9HCK5 861 aaKnown RBP10.87□□□□□ -0.67
CUX1-216ENST00000558469 KCNMB3Q9NPA1 279 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 PDGFCQ9NRA1 345 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 RCOR1Q9UKL0 485 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 ZHX1Q9UKY1 873 aaPredicted RBP10.87□□□□□ -0.67
CUX1-216ENST00000558469 PTPN22Q9Y2R2 807 aa10.87□□□□□ -0.67
CUX1-216ENST00000558469 FRMPD3Q5JV73 1810 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 TBX3O15119 743 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 ATP9AO75110 1047 aa10.86□□□□□ -0.67
CUX1-216ENST00000558469 TGFB3P10600 412 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms