RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ZNF274Q96GC6 653 aaPredicted RBP9.92□□□□□ -0.82
USP3-208ENST00000558285 RNF26Q9BY78 433 aaPredicted RBP9.92□□□□□ -0.82
USP3-208ENST00000558285 PDGFCQ9NRA1 345 aa9.92□□□□□ -0.82
USP3-208ENST00000558285 COLQQ9Y215 455 aaPredicted RBP9.92□□□□□ -0.82
USP3-208ENST00000558285 V9GY48 417 aaPredicted RBP9.92□□□□□ -0.82
USP3-208ENST00000558285 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.91□□□□□ -0.82
USP3-208ENST00000558285 KIAA0355O15063 1070 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 PPP1R11O60927 126 aaPredicted RBP9.91□□□□□ -0.82
USP3-208ENST00000558285 PPFIA4O75335 1185 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 SCG2P13521 617 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 SYN1P17600 705 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 ZNF76P36508 570 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 MAGEA10P43363 369 aaPredicted RBP9.91□□□□□ -0.82
USP3-208ENST00000558285 BEX3Q00994 111 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 PPIGQ13427 754 aaKnown RBP eCLIP9.91□□□□□ -0.822e-6■■■□□ 16.3
USP3-208ENST00000558285 FAM47CQ5HY64 1035 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 CCSAPQ6IQ19 270 aaPredicted RBP9.91□□□□□ -0.82
USP3-208ENST00000558285 NFRKBQ6P4R8 1299 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 TDHQ8IZJ6 230 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 RETREG2Q8NC44 543 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 PPTC7Q8NI37 304 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 GPRASP2Q96D09 838 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 RIC8AQ9NPQ8 531 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 BARHL2Q9NY43 387 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 ZNF215Q9UL58 517 aaPredicted RBP9.91□□□□□ -0.82
USP3-208ENST00000558285 FRMPD3Q5JV73 1810 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 ASTN1O14525 1302 aa9.91□□□□□ -0.82
USP3-208ENST00000558285 ESYT2A0FGR8 921 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 SMCO2A6NFE2 343 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 PRPF3O43395 683 aaKnown RBP9.9□□□□□ -0.82
USP3-208ENST00000558285 PARNO95453 639 aaKnown RBP9.9□□□□□ -0.82
USP3-208ENST00000558285 GNAT1P11488 350 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 FPGSQ05932 587 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 SSRP1Q08945 709 aaKnown RBP9.9□□□□□ -0.82
USP3-208ENST00000558285 APOBRQ0VD83 1088 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 BFSP2Q13515 415 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 PFKFB3Q16875 520 aaPredicted RBP9.9□□□□□ -0.82
USP3-208ENST00000558285 GALNT17Q6IS24 598 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 RPUSD2Q8IZ73 545 aaKnown RBP9.9□□□□□ -0.82
USP3-208ENST00000558285 C7orf31Q8N865 590 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 TCEANC2Q96MN5 208 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 PURBQ96QR8 312 aaKnown RBP9.9□□□□□ -0.82
USP3-208ENST00000558285 GDF15Q99988 308 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 SENP7Q9BQF6 1050 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 AGXT2Q9BYV1 514 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 PDLIM7Q9NR12 457 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 SH3GLB2Q9NR46 395 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 DDX41Q9UJV9 622 aaKnown RBP9.9□□□□□ -0.82
USP3-208ENST00000558285 NID2Q14112 1375 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 FRMPD4Q14CM0 1322 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 CNTNAP5Q8WYK1 1306 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 MYH6P13533 1939 aa9.9□□□□□ -0.82
USP3-208ENST00000558285 ATMINO43313 823 aaPredicted RBP9.9□□□□□ -0.83
USP3-208ENST00000558285 TIMP1P01033 207 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 RPLP2P05387 115 aaKnown RBP9.9□□□□□ -0.83
USP3-208ENST00000558285 PFKMP08237 780 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 ICAM3P32942 547 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 EVCP57679 992 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 PURAQ00577 322 aaKnown RBP9.9□□□□□ -0.83
USP3-208ENST00000558285 CCDC62Q6P9F0 684 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 PSRC1Q6PGN9 363 aaPredicted RBP9.9□□□□□ -0.83
USP3-208ENST00000558285 RAB11FIP4Q86YS3 637 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 REXO1Q8N1G1 1221 aaKnown RBP9.9□□□□□ -0.83
USP3-208ENST00000558285 TBC1D5Q92609 795 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 SPATA33Q96N06 139 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 SDF4Q9BRK5 362 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 SLKQ9H2G2 1235 aaPredicted RBP9.9□□□□□ -0.83
USP3-208ENST00000558285 COL20A1Q9P218 1284 aa9.9□□□□□ -0.83
USP3-208ENST00000558285 MYADML2A6NDP7 307 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 OPLAHO14841 1288 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 DEXIO95424 95 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 GGPS1O95749 300 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 MMP3P08254 477 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 IFNAR1P17181 557 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 CDK7P50613 346 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 MDM2Q00987 491 aaPredicted RBP9.89□□□□□ -0.83
USP3-208ENST00000558285 MTMR1Q13613 665 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 CELF3Q5SZQ8 465 aaKnown RBP9.89□□□□□ -0.83
USP3-208ENST00000558285 GPR153Q6NV75 609 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 USP17L6PQ6QN14 398 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 METTL7BQ6UX53 244 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 CMTR1Q8N1G2 835 aaKnown RBP9.89□□□□□ -0.83
USP3-208ENST00000558285 KCNV2Q8TDN2 545 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 AFG1LQ8WV93 481 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 INPP4AQ96PE3 977 aaPredicted RBP9.89□□□□□ -0.83
USP3-208ENST00000558285 ALDH8A1Q9H2A2 487 aaPredicted RBP9.89□□□□□ -0.83
USP3-208ENST00000558285 BRMS1Q9HCU9 246 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 PCDHA6Q9UN73 950 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 PCDHA8Q9Y5H6 950 aa9.89□□□□□ -0.83
USP3-208ENST00000558285 SPATA31C2B4DYI2 1134 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 MEIS2O14770 477 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 ACTN1P12814 892 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 PDIA3P30101 505 aaKnown RBP9.88□□□□□ -0.83
USP3-208ENST00000558285 RFC2P35250 354 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 CHMP4BP1P59074 171 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 SETQ01105 290 aaPredicted RBP9.88□□□□□ -0.83
USP3-208ENST00000558285 ARHGAP1Q07960 439 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 LY6KQ17RY6 165 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 WWC2Q6AWC2 1192 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 MFSD5Q6N075 450 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms